Gcaud3658.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3658.t1
Unique NameGcaud3658.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length500
Homology
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BLAST of Gcaud3658.t1 vs. uniprot
Match: A0A2V3IZA2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZA2_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 1.380e-14
Identity = 60/196 (30.61%), Postives = 86/196 (43.88%), Query Frame = 0 
Query:    1 MVTAFRKSELWALPMKDVTLVKRNDKESWRVVGRIGCPDGASKMRGKGLSMVT---------------------------------------------------RKSFYKKGNLGVSTVGNYLTHACRDLGIKVEGLFDPVIVHGFRGTGASQLYAAGFSDARVTLRTGHRDCRSLQAYHNLSGNLGEQQQAAIFG 145
            ++T+ RK ELWAL MKDVTL     ++ W++VG  G   GAS+ + +G ++V                                                    R+ F+++GNLG+ ++ NY+  AC  LGI  EG+ D V V G R T  S L  +   +         R+ R+L+  HN  GNLG QQQ  I G
Sbjct:  329 LMTSLRKRELWALRMKDVTLCVEQGEKVWKIVGCNGTSGGASETQARGWALVNSKPKEVYIRNTEHLGGLVNIFKDVEEYMQIVTTMRGPEDHFLASVNYTAIDRRKFFRRGNLGIHSIANYVKEACEVLGIVGEGVNDHVTVDGLRETVISNLADSDHGELS-------RESRTLKDKHNHRGNLGRQQQMTIRG 517
The following BLAST results are available for this feature:
BLAST of Gcaud3658.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZA2_9FLOR1.380e-1430.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 1..144
e-value: 2.5E-6
score: 29.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..157
NoneNo IPR availableCDDcd00397DNA_BRE_Ccoord: 3..128
e-value: 1.68578E-4
score: 40.1559
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 2..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_78_length_55752_cov_4.650078contigNODE_78_length_55752_cov_4.650078:18317..20770 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3658.t1Gcaud3658.t1Gracilaria caudata M_176_S67 malemRNANODE_78_length_55752_cov_4.650078 18317..20770 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MVTAFRKSELWALPMKDVTLVKRNDKESWRVVGRIGCPDGASKMRGKGLS
MVTRKSFYKKGNLGVSTVGNYLTHACRDLGIKVEGLFDPVIVHGFRGTGA
SQLYAAGFSDARVTLRTGHRDCRSLQAYHNLSGNLGEQQQAAIFGQNAAS
AAPKRRSAQSEKSYETDKENNGREATSNDYAMIRMEEPESARKFSDCQQL
VHSSSENKHSKPFLLPPFKKRQHPMIIAHQIMTSVRKTAPRPLPIRIVRH
FRNFERYIRPVNMFEALSISKKMMIERLRTHEPIAVTKPVFVADSCTITI
PAYALSGSHRLVAAKDSMCHLIYAHTVSAAQIIRVYEAVRALNKCDRKHG
MPTEMVKKFLMQALRLLVLVSNTRDLSPTPYTPLHQAVILRTLVLDEADM
PEPVSSDRKIHGGYSFLRDRFLGYNCSAALETHHRNHFLYNFSLSSRHLN
RQLLGCMRLIEIYLSRSISRLGSRTSVLDILVLWEDKHLMPAFRDIHIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz