Gcaud3658.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3658.t1
Unique Name	Gcaud3658.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	500

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_78_length_55752_cov_4.650078	contig	NODE_78_length_55752_cov_4.650078:18317..20770 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3658	Gcaud3658	Gracilaria caudata M_176_S67 male	gene	NODE_78_length_55752_cov_4.650078 18317..20770 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1	Gcaud3658.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_78_length_55752_cov_4.650078 18317..20770 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1.stop1	Gcaud3658.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_78_length_55752_cov_4.650078 18317..18319 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1.CDS1	Gcaud3658.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 18317..19240 -
Gcaud3658.t1.CDS2	Gcaud3658.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 20043..20459 -
Gcaud3658.t1.CDS3	Gcaud3658.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 20612..20770 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1.exon1	Gcaud3658.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 18317..19240 -
Gcaud3658.t1.exon2	Gcaud3658.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 20043..20459 -
Gcaud3658.t1.exon3	Gcaud3658.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 20612..20770 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1.intron1	Gcaud3658.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 19241..20042 -
Gcaud3658.t1.intron2	Gcaud3658.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 20460..20611 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3658.t1.start1	Gcaud3658.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_78_length_55752_cov_4.650078 20768..20770 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_78_length_55752_cov_4.650078:18317..20770-
coding sequence from alignment at NODE_78_length_55752_cov_4.650078:18317..20770-

mRNA sequence

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp
MVTAFRKSELWALPMKDVTLVKRNDKESWRVVGRIGCPDGASKMRGKGLS
MVTRKSFYKKGNLGVSTVGNYLTHACRDLGIKVEGLFDPVIVHGFRGTGA
SQLYAAGFSDARVTLRTGHRDCRSLQAYHNLSGNLGEQQQAAIFGQNAAS
AAPKRRSAQSEKSYETDKENNGREATSNDYAMIRMEEPESARKFSDCQQL
VHSSSENKHSKPFLLPPFKKRQHPMIIAHQIMTSVRKTAPRPLPIRIVRH
FRNFERYIRPVNMFEALSISKKMMIERLRTHEPIAVTKPVFVADSCTITI
PAYALSGSHRLVAAKDSMCHLIYAHTVSAAQIIRVYEAVRALNKCDRKHG
MPTEMVKKFLMQALRLLVLVSNTRDLSPTPYTPLHQAVILRTLVLDEADM
PEPVSSDRKIHGGYSFLRDRFLGYNCSAALETHHRNHFLYNFSLSSRHLN
RQLLGCMRLIEIYLSRSISRLGSRTSVLDILVLWEDKHLMPAFRDIHIG*

spliced messenger RNA

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:18317..20770- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACTGCTTTCCGAAAGAGTGAGTTGTGGGCTCTTCCCATGAAGGA
TGTTACTCTTGTGAAGCGAAACGATAAAGAAAGTTGGAGAGTTGTGGGAA
GAATTGGCTGTCCTGATGGAGCTTCCAAGATGCGAGGCAAAGGCCTTTCC
ATGGTTACTAGAAAGTCTTTTTATAAGAAAGGTAATCTCGGTGTCAGTAC
TGTTGGAAATTATCTAACTCATGCATGCCGTGATCTTGGAATCAAGGTTG
AAGGTCTTTTTGACCCTGTAATTGTCCATGGCTTTCGAGGTACGGGAGCA
AGCCAGCTTTACGCTGCCGGTTTTTCAGACGCCAGGGTGACGCTACGTAC
TGGACATCGAGACTGCAGGTCTCTTCAGGCCTATCACAATTTGAGTGGAA
ATCTGGGTGAGCAGCAGCAAGCTGCAATATTTGGACAAAATGCTGCTTCT
GCTGCACCAAAGAGGCGCTCTGCGCAGTCGGAGAAGAGTTATGAAACCGA
CAAGGAGAACAACGGCCGAGAGGCAACCAGTAACGATTATGCAATGATTA
GAATGGAAGAGCCGGAGAGCGCGCGTAAGTTTTCAGATTGTCAACAACTG
GTCCATTCTTCTTCCGAAAACAAACATTCCAAACCGTTCCTGTTACCTCC
CTTCAAGAAGCGTCAACATCCTATGATTATTGCCCATCAAATCATGACCT
CCGTCCGCAAAACGGCTCCACGACCACTGCCAATCCGAATTGTTCGACAT
TTTCGGAACTTCGAACGATACATTCGACCCGTGAACATGTTTGAGGCGCT
TTCAATCAGCAAAAAGATGATGATCGAGCGACTTCGAACTCACGAGCCCA
TTGCAGTAACTAAACCCGTTTTCGTTGCCGACTCATGCACCATAACAATT
CCAGCATATGCACTATCGGGAAGCCATCGTCTTGTTGCTGCTAAAGACTC
GATGTGTCACTTGATATATGCGCATACTGTGTCTGCTGCGCAAATCATTC
GTGTTTATGAAGCTGTGAGAGCGTTGAATAAATGTGATCGAAAGCACGGC
ATGCCTACCGAAATGGTTAAGAAGTTCTTGATGCAGGCTTTGCGACTCCT
AGTATTGGTATCAAATACGAGGGATTTATCTCCCACTCCATACACTCCAT
TACATCAAGCAGTCATTTTGAGAACACTTGTGCTCGATGAAGCAGACATG
CCGGAACCAGTCTCTAGTGATCGAAAAATACATGGTGGATACAGTTTCTT
GAGGGATAGATTTCTTGGATACAACTGCAGTGCGGCGTTAGAAACACATC
ACAGGAATCATTTTCTGTACAACTTTTCGCTTAGCTCCCGTCATCTCAAT
CGGCAGCTTTTGGGTTGTATGCGCCTTATTGAGATATATCTGTCTCGATC
AATTTCACGCCTTGGTAGTCGGACATCTGTTCTTGATATTCTCGTTCTTT
GGGAGGACAAGCATTTAATGCCGGCTTTTAGAGATATCCATATTGGTTAG

protein sequence of Gcaud3658.t1

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MVTAFRKSELWALPMKDVTLVKRNDKESWRVVGRIGCPDGASKMRGKGLS
MVTRKSFYKKGNLGVSTVGNYLTHACRDLGIKVEGLFDPVIVHGFRGTGA
SQLYAAGFSDARVTLRTGHRDCRSLQAYHNLSGNLGEQQQAAIFGQNAAS
AAPKRRSAQSEKSYETDKENNGREATSNDYAMIRMEEPESARKFSDCQQL
VHSSSENKHSKPFLLPPFKKRQHPMIIAHQIMTSVRKTAPRPLPIRIVRH
FRNFERYIRPVNMFEALSISKKMMIERLRTHEPIAVTKPVFVADSCTITI
PAYALSGSHRLVAAKDSMCHLIYAHTVSAAQIIRVYEAVRALNKCDRKHG
MPTEMVKKFLMQALRLLVLVSNTRDLSPTPYTPLHQAVILRTLVLDEADM
PEPVSSDRKIHGGYSFLRDRFLGYNCSAALETHHRNHFLYNFSLSSRHLN
RQLLGCMRLIEIYLSRSISRLGSRTSVLDILVLWEDKHLMPAFRDIHIG*

mRNA from alignment at NODE_78_length_55752_cov_4.650078:18317..20770-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2454bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:18317..20770- (Gracilaria caudata M_176_S67 male)
ATGGTGACTGCTTTCCGAAAGAGTGAGTTGTGGGCTCTTCCCATGAAGGA
TGTTACTCTTGTGAAGCGAAACGATAAAGAAAGTTGGAGAGTTGTGGGAA
GAATTGGCTGTCCTGATGGAGCTTCCAAGATGCGAGGCAAAGGCCTTTCC
ATGGTTACTGTAAGGACCAAAGAGATTTTTATCTTTGAACTCACTATATC
TGAGTTGAAGGTTAACGTATTTCAAGACTTGCGCGAGTACCTTGCCATTG
TCCAACCAAGTCGTGCTGATGAAGACAACCTTTTCCTGTGGTGAACTACA
ATGCGGCACAGAGAAAGTCTTTTTATAAGAAAGGTAATCTCGGTGTCAGT
ACTGTTGGAAATTATCTAACTCATGCATGCCGTGATCTTGGAATCAAGGT
TGAAGGTCTTTTTGACCCTGTAATTGTCCATGGCTTTCGAGGTACGGGAG
CAAGCCAGCTTTACGCTGCCGGTTTTTCAGACGCCAGGGTGACGCTACGT
ACTGGACATCGAGACTGCAGGTCTCTTCAGGCCTATCACAATTTGAGTGG
AAATCTGGGTGAGCAGCAGCAAGCTGCAATATTTGGACAAAATGCTGCTT
CTGCTGCACCAAAGAGGCGCTCTGCGCAGTCGGAGAAGAGTTATGAAACC
GACAAGGAGAACAACGGCCGAGAGGCAACCAGTAACGATTATGCAATGAT
TAGAATGGAAGAGCCGGAGAGCGCGCGTGTGGTATCGAGATTCGCCAACC
GGCAGAGATTGGGTGACGTTTACAATGATATTCAAAGCATTTCAGGTCAG
TTAGCCGTGAATGTACTACGGGGACAAGAGCAAAGGAGGGGCGAACATGC
GCAACGAAGAAGAAAGCTGATTGAGAGGAGCATGTGGCGACGGAGAGAGC
GGAGTTTGAGTGAAGAACGTGACGTGAGAATCTTGTGACTGCTTGCGGAC
CAAAGTAGATATCTCTTTCGCAGTAATTATATGCGGTTTAAGAGTTGTCT
CCCTGACATTGACGGACCACATTCCACGTCTCACTTACATGGAAGGACCC
GTCTGATTTCCGCACTGTCTGTGCGAGATAACTCGTACTGTACGTCAGGA
TAAAGTTACTTGAGGAATTCACGCCTACCCACAGCTCTAACACGGTGTTT
CACCTCTTTCTCTCCAATGCGAAGCCACCATTTCGTCGCTGAAGTCAGTT
CCCAATAGAGGAAACTGTAGGGGCTGCTTAGATGACTTGATTGGCTAGAA
AAAGGGCTGCAGGAAAGAAACAATTGGCTACTGGACGGCCACAAGTACCG
TTTGGTTGGCTCAAAATTGAACCGCGGCCATGTCATTCAGTTAACATCGT
ACGCAAGCAAGACACGTGTATTCCACTTCACATGGAACTTGACTCATTGT
CACACCGTGACAAATATAAGACTAACTATTCTCTCCAAGCCAAAAGTACC
TTATTCTATCTTAGTAGAAAATGAAGTTAAACCAATATTTTGAAAGTCAA
ATAACTACTCCAAATAAATTGCTTTCCTAGAAGTTTTCAGATTGTCAACA
ACTGGTCCATTCTTCTTCCGAAAACAAACATTCCAAACCGTTCCTGTTAC
CTCCCTTCAAGAAGCGTCAACATCCTATGATTATTGCCCATCAAATCATG
ACCTCCGTCCGCAAAACGGCTCCACGACCACTGCCAATCCGAATTGTTCG
ACATTTTCGGAACTTCGAACGATACATTCGACCCGTGAACATGTTTGAGG
CGCTTTCAATCAGCAAAAAGATGATGATCGAGCGACTTCGAACTCACGAG
CCCATTGCAGTAACTAAACCCGTTTTCGTTGCCGACTCATGCACCATAAC
AATTCCAGCATATGCACTATCGGGAAGCCATCGTCTTGTTGCTGCTAAAG
ACTCGATGTGTCACTTGATATATGCGCATACTGTGTCTGCTGCGCAAATC
ATTCGTGTTTATGAAGCTGTGAGAGCGTTGAATAAATGTGATCGAAAGCA
CGGCATGCCTACCGAAATGGTTAAGAAGTTCTTGATGCAGGCTTTGCGAC
TCCTAGTATTGGTATCAAATACGAGGGATTTATCTCCCACTCCATACACT
CCATTACATCAAGCAGTCATTTTGAGAACACTTGTGCTCGATGAAGCAGA
CATGCCGGAACCAGTCTCTAGTGATCGAAAAATACATGGTGGATACAGTT
TCTTGAGGGATAGATTTCTTGGATACAACTGCAGTGCGGCGTTAGAAACA
CATCACAGGAATCATTTTCTGTACAACTTTTCGCTTAGCTCCCGTCATCT
CAATCGGCAGCTTTTGGGTTGTATGCGCCTTATTGAGATATATCTGTCTC
GATCAATTTCACGCCTTGGTAGTCGGACATCTGTTCTTGATATTCTCGTT
CTTTGGGAGGACAAGCATTTAATGCCGGCTTTTAGAGATATCCATATTGG
TTAG

Coding sequence (CDS) from alignment at NODE_78_length_55752_cov_4.650078:18317..20770-

>Gcaud3658.t1 ID=Gcaud3658.t1|Name=Gcaud3658.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1500bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:18317..20770- (Gracilaria caudata M_176_S67 male)
ATGGTGACTGCTTTCCGAAAGAGTGAGTTGTGGGCTCTTCCCATGAAGGA
TGTTACTCTTGTGAAGCGAAACGATAAAGAAAGTTGGAGAGTTGTGGGAA
GAATTGGCTGTCCTGATGGAGCTTCCAAGATGCGAGGCAAAGGCCTTTCC
ATGGTTACTAGAAAGTCTTTTTATAAGAAAGGTAATCTCGGTGTCAGTAC
TGTTGGAAATTATCTAACTCATGCATGCCGTGATCTTGGAATCAAGGTTG
AAGGTCTTTTTGACCCTGTAATTGTCCATGGCTTTCGAGGTACGGGAGCA
AGCCAGCTTTACGCTGCCGGTTTTTCAGACGCCAGGGTGACGCTACGTAC
TGGACATCGAGACTGCAGGTCTCTTCAGGCCTATCACAATTTGAGTGGAA
ATCTGGGTGAGCAGCAGCAAGCTGCAATATTTGGACAAAATGCTGCTTCT
GCTGCACCAAAGAGGCGCTCTGCGCAGTCGGAGAAGAGTTATGAAACCGA
CAAGGAGAACAACGGCCGAGAGGCAACCAGTAACGATTATGCAATGATTA
GAATGGAAGAGCCGGAGAGCGCGCGTAAGTTTTCAGATTGTCAACAACTG
GTCCATTCTTCTTCCGAAAACAAACATTCCAAACCGTTCCTGTTACCTCC
CTTCAAGAAGCGTCAACATCCTATGATTATTGCCCATCAAATCATGACCT
CCGTCCGCAAAACGGCTCCACGACCACTGCCAATCCGAATTGTTCGACAT
TTTCGGAACTTCGAACGATACATTCGACCCGTGAACATGTTTGAGGCGCT
TTCAATCAGCAAAAAGATGATGATCGAGCGACTTCGAACTCACGAGCCCA
TTGCAGTAACTAAACCCGTTTTCGTTGCCGACTCATGCACCATAACAATT
CCAGCATATGCACTATCGGGAAGCCATCGTCTTGTTGCTGCTAAAGACTC
GATGTGTCACTTGATATATGCGCATACTGTGTCTGCTGCGCAAATCATTC
GTGTTTATGAAGCTGTGAGAGCGTTGAATAAATGTGATCGAAAGCACGGC
ATGCCTACCGAAATGGTTAAGAAGTTCTTGATGCAGGCTTTGCGACTCCT
AGTATTGGTATCAAATACGAGGGATTTATCTCCCACTCCATACACTCCAT
TACATCAAGCAGTCATTTTGAGAACACTTGTGCTCGATGAAGCAGACATG
CCGGAACCAGTCTCTAGTGATCGAAAAATACATGGTGGATACAGTTTCTT
GAGGGATAGATTTCTTGGATACAACTGCAGTGCGGCGTTAGAAACACATC
ACAGGAATCATTTTCTGTACAACTTTTCGCTTAGCTCCCGTCATCTCAAT
CGGCAGCTTTTGGGTTGTATGCGCCTTATTGAGATATATCTGTCTCGATC
AATTTCACGCCTTGGTAGTCGGACATCTGTTCTTGATATTCTCGTTCTTT
GGGAGGACAAGCATTTAATGCCGGCTTTTAGAGATATCCATATTGGTTAG