Gcaud9303.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9303.t1
Unique Name	Gcaud9303.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	701

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1188_length_12866_cov_4.640157	contig	NODE_1188_length_12866_cov_4.640157:5228..7330 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S234_73V6.1
PFAMs	SRP72,SRP_TPR_like
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03108
KEGG TC	3.A.5.9
KEGG Pathway	ko03060,map03060
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0019904,GO:0030911,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
Evalue	1.51e-42
EggNOG OGs	KOG2376@1\|root,KOG2376@2759\|Eukaryota,37KI0@33090\|Viridiplantae,3G8VG@35493\|Streptophyta
Description	Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane
COG category	U
BRITE	ko00000,ko00001,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9303	Gcaud9303	Gracilaria caudata M_176_S67 male	gene	NODE_1188_length_12866_cov_4.640157 5228..7330 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9303.t1.stop1	Gcaud9303.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1188_length_12866_cov_4.640157 5228..5230 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9303.t1.CDS1	Gcaud9303.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1188_length_12866_cov_4.640157 5228..7330 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9303.t1.exon1	Gcaud9303.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1188_length_12866_cov_4.640157 5228..7330 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9303.t1.start1	Gcaud9303.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1188_length_12866_cov_4.640157 7328..7330 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9303.t1	Gcaud9303.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1188_length_12866_cov_4.640157 5228..7330 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330-
coding sequence from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330-

mRNA sequence

>Gcaud9303.t1 ID=Gcaud9303.t1|Name=Gcaud9303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp
MPASELQDGAVDELQQLFNRGQYETVLNRVNQFRKRNKKRSPSVSHILDA
ARAFSLIHLGRADEALPSIEALLQTKSPPFKEQLLYAKAYAAWAINERLV
QAMDTTAPMHGQDVQKLKAQLLYRAGRYDDAANLYERLLTQARNTLREKK
EPAATSRWRLPGITARATQVASPVTAAELEQLTSAVNELATNAMASMILA
RTHEKLPSIQDGLRPSYEIEYNAACSHIALEDFENAQACLEKAEALINSE
LDEEDDDIEEATAPLFVQQAYLNHMAGDIEAAKQSYYEVVNGRRCDAASL
AVAANNLTVAIGQLALGKATLSVAQDGTRSLSKQQHEALVEGLKKMKTTA
SRNVIRKLTSHQRQAMGRNRAVLFVQMGRLDACRSEIEMLKVHYPDDALV
RLLEASLQAKKGQLQNADQLLSEAADTPVIRAARVQLAASHGEKERAAEL
LQKLFPDSPAAVRTAASFLEQSNQVQDGIALLKEFVSNASADLKASANRE
LAALLLRNGFYRESAEILRDCIKASRSDPLATAQLAVATSHFDPDEADRI
ASALPGTSLRTTGEDAERLEQLPPPKRKHLSNRTLDASNDAEDKLLTATP
RRDKKKKPKKKKLPKNYDPDGPPPDPERWLPKTLRSGYRKKKVKRDQAPF
RGSQGADAASAEAAAQTLADKASSKASSASTNTLPPRSRPRMQRRKKGRK
*

spliced messenger RNA

>Gcaud9303.t1 ID=Gcaud9303.t1|Name=Gcaud9303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCTCTGAGCTTCAAGATGGTGCTGTGGACGAACTTCAACAGCT
CTTCAATCGAGGACAGTACGAGACCGTATTAAACCGCGTCAACCAGTTTC
GGAAGCGGAACAAGAAACGATCCCCGTCAGTGAGCCACATTTTGGATGCC
GCCCGTGCGTTCTCATTGATTCATCTCGGCCGAGCAGATGAAGCGCTTCC
GTCCATAGAGGCCCTTTTGCAAACTAAATCACCACCGTTTAAGGAACAGC
TTCTGTACGCTAAGGCCTACGCTGCGTGGGCTATAAACGAACGTCTCGTT
CAAGCAATGGATACAACGGCTCCTATGCACGGCCAAGATGTACAAAAGCT
GAAAGCGCAGCTTCTTTATCGAGCAGGACGTTATGATGATGCAGCTAATC
TGTATGAACGCCTTCTCACCCAAGCACGCAACACTCTCAGAGAGAAAAAA
GAGCCCGCTGCGACTTCCCGATGGAGATTGCCAGGAATCACTGCGAGGGC
CACACAAGTCGCTTCCCCAGTGACAGCCGCGGAGCTGGAACAGTTGACAA
GCGCTGTTAACGAACTTGCAACAAACGCCATGGCTTCGATGATACTCGCC
CGAACGCATGAGAAGCTACCTTCCATCCAAGATGGACTTCGACCAAGTTA
CGAAATCGAATACAACGCCGCATGTAGCCACATAGCGCTAGAAGATTTCG
AGAACGCCCAAGCTTGTTTAGAGAAGGCAGAAGCTTTAATTAATTCAGAA
CTTGACGAGGAAGACGATGATATTGAAGAAGCAACCGCTCCGCTTTTTGT
GCAACAAGCGTATCTGAATCACATGGCAGGAGATATTGAAGCAGCGAAAC
AATCGTACTACGAAGTTGTTAATGGAAGGAGATGTGATGCCGCATCACTA
GCTGTGGCAGCGAACAATCTTACAGTTGCGATTGGACAACTTGCCCTCGG
GAAAGCTACCCTTTCTGTTGCACAAGACGGTACTAGATCGTTATCAAAGC
AACAACATGAAGCGCTAGTTGAAGGACTGAAAAAAATGAAGACCACTGCA
AGCAGAAATGTTATACGAAAGCTTACTTCGCATCAACGGCAAGCAATGGG
TAGGAATCGAGCTGTACTTTTTGTGCAGATGGGCAGACTTGATGCCTGTC
GTTCTGAGATCGAAATGTTGAAAGTGCATTATCCTGATGATGCTCTTGTA
CGCCTTCTTGAGGCTAGTCTGCAAGCAAAGAAAGGACAGCTACAGAATGC
TGACCAGTTGCTTTCAGAAGCTGCAGACACGCCAGTAATTCGCGCTGCTA
GAGTTCAACTAGCTGCTTCGCATGGTGAAAAGGAAAGGGCCGCTGAGCTT
CTTCAGAAACTTTTCCCAGACAGTCCCGCCGCAGTTCGCACAGCCGCTTC
GTTCCTAGAACAAAGCAATCAAGTACAGGATGGCATAGCTCTTCTCAAAG
AGTTTGTTTCAAACGCAAGCGCTGATCTGAAAGCAAGTGCAAACCGTGAA
CTAGCTGCACTGCTTCTTCGAAACGGCTTCTATCGAGAAAGTGCCGAAAT
CCTTCGAGATTGCATAAAGGCTTCTAGAAGCGATCCTCTTGCTACTGCAC
AGCTAGCGGTAGCTACATCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCATTACCGGGTACGAGCTTGCGTACAACGGGAGAAGATGCCGA
ACGATTGGAACAGCTTCCTCCTCCAAAAAGAAAGCACTTATCCAATCGAA
CTTTGGACGCCTCGAACGATGCGGAGGATAAACTGCTCACCGCGACTCCT
CGCCGAGACAAGAAGAAGAAACCAAAGAAGAAGAAATTGCCCAAGAACTA
TGATCCAGACGGCCCACCACCAGATCCAGAGAGGTGGCTCCCCAAAACGT
TGCGATCGGGTTATCGGAAGAAGAAAGTAAAACGGGATCAAGCGCCCTTC
CGGGGTTCTCAAGGAGCTGATGCGGCGTCAGCTGAAGCTGCTGCGCAGAC
CTTGGCGGACAAGGCCTCCTCCAAGGCCTCCTCTGCTTCAACCAATACCT
TACCGCCAAGAAGTCGGCCACGAATGCAAAGAAGAAAGAAAGGTCGGAAA
TAG

protein sequence of Gcaud9303.t1

>Gcaud9303.t1 ID=Gcaud9303.t1|Name=Gcaud9303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=701bp
MPASELQDGAVDELQQLFNRGQYETVLNRVNQFRKRNKKRSPSVSHILDA
ARAFSLIHLGRADEALPSIEALLQTKSPPFKEQLLYAKAYAAWAINERLV
QAMDTTAPMHGQDVQKLKAQLLYRAGRYDDAANLYERLLTQARNTLREKK
EPAATSRWRLPGITARATQVASPVTAAELEQLTSAVNELATNAMASMILA
RTHEKLPSIQDGLRPSYEIEYNAACSHIALEDFENAQACLEKAEALINSE
LDEEDDDIEEATAPLFVQQAYLNHMAGDIEAAKQSYYEVVNGRRCDAASL
AVAANNLTVAIGQLALGKATLSVAQDGTRSLSKQQHEALVEGLKKMKTTA
SRNVIRKLTSHQRQAMGRNRAVLFVQMGRLDACRSEIEMLKVHYPDDALV
RLLEASLQAKKGQLQNADQLLSEAADTPVIRAARVQLAASHGEKERAAEL
LQKLFPDSPAAVRTAASFLEQSNQVQDGIALLKEFVSNASADLKASANRE
LAALLLRNGFYRESAEILRDCIKASRSDPLATAQLAVATSHFDPDEADRI
ASALPGTSLRTTGEDAERLEQLPPPKRKHLSNRTLDASNDAEDKLLTATP
RRDKKKKPKKKKLPKNYDPDGPPPDPERWLPKTLRSGYRKKKVKRDQAPF
RGSQGADAASAEAAAQTLADKASSKASSASTNTLPPRSRPRMQRRKKGRK
*

mRNA from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9303.t1 ID=Gcaud9303.t1|Name=Gcaud9303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTCTGAGCTTCAAGATGGTGCTGTGGACGAACTTCAACAGCT
CTTCAATCGAGGACAGTACGAGACCGTATTAAACCGCGTCAACCAGTTTC
GGAAGCGGAACAAGAAACGATCCCCGTCAGTGAGCCACATTTTGGATGCC
GCCCGTGCGTTCTCATTGATTCATCTCGGCCGAGCAGATGAAGCGCTTCC
GTCCATAGAGGCCCTTTTGCAAACTAAATCACCACCGTTTAAGGAACAGC
TTCTGTACGCTAAGGCCTACGCTGCGTGGGCTATAAACGAACGTCTCGTT
CAAGCAATGGATACAACGGCTCCTATGCACGGCCAAGATGTACAAAAGCT
GAAAGCGCAGCTTCTTTATCGAGCAGGACGTTATGATGATGCAGCTAATC
TGTATGAACGCCTTCTCACCCAAGCACGCAACACTCTCAGAGAGAAAAAA
GAGCCCGCTGCGACTTCCCGATGGAGATTGCCAGGAATCACTGCGAGGGC
CACACAAGTCGCTTCCCCAGTGACAGCCGCGGAGCTGGAACAGTTGACAA
GCGCTGTTAACGAACTTGCAACAAACGCCATGGCTTCGATGATACTCGCC
CGAACGCATGAGAAGCTACCTTCCATCCAAGATGGACTTCGACCAAGTTA
CGAAATCGAATACAACGCCGCATGTAGCCACATAGCGCTAGAAGATTTCG
AGAACGCCCAAGCTTGTTTAGAGAAGGCAGAAGCTTTAATTAATTCAGAA
CTTGACGAGGAAGACGATGATATTGAAGAAGCAACCGCTCCGCTTTTTGT
GCAACAAGCGTATCTGAATCACATGGCAGGAGATATTGAAGCAGCGAAAC
AATCGTACTACGAAGTTGTTAATGGAAGGAGATGTGATGCCGCATCACTA
GCTGTGGCAGCGAACAATCTTACAGTTGCGATTGGACAACTTGCCCTCGG
GAAAGCTACCCTTTCTGTTGCACAAGACGGTACTAGATCGTTATCAAAGC
AACAACATGAAGCGCTAGTTGAAGGACTGAAAAAAATGAAGACCACTGCA
AGCAGAAATGTTATACGAAAGCTTACTTCGCATCAACGGCAAGCAATGGG
TAGGAATCGAGCTGTACTTTTTGTGCAGATGGGCAGACTTGATGCCTGTC
GTTCTGAGATCGAAATGTTGAAAGTGCATTATCCTGATGATGCTCTTGTA
CGCCTTCTTGAGGCTAGTCTGCAAGCAAAGAAAGGACAGCTACAGAATGC
TGACCAGTTGCTTTCAGAAGCTGCAGACACGCCAGTAATTCGCGCTGCTA
GAGTTCAACTAGCTGCTTCGCATGGTGAAAAGGAAAGGGCCGCTGAGCTT
CTTCAGAAACTTTTCCCAGACAGTCCCGCCGCAGTTCGCACAGCCGCTTC
GTTCCTAGAACAAAGCAATCAAGTACAGGATGGCATAGCTCTTCTCAAAG
AGTTTGTTTCAAACGCAAGCGCTGATCTGAAAGCAAGTGCAAACCGTGAA
CTAGCTGCACTGCTTCTTCGAAACGGCTTCTATCGAGAAAGTGCCGAAAT
CCTTCGAGATTGCATAAAGGCTTCTAGAAGCGATCCTCTTGCTACTGCAC
AGCTAGCGGTAGCTACATCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCATTACCGGGTACGAGCTTGCGTACAACGGGAGAAGATGCCGA
ACGATTGGAACAGCTTCCTCCTCCAAAAAGAAAGCACTTATCCAATCGAA
CTTTGGACGCCTCGAACGATGCGGAGGATAAACTGCTCACCGCGACTCCT
CGCCGAGACAAGAAGAAGAAACCAAAGAAGAAGAAATTGCCCAAGAACTA
TGATCCAGACGGCCCACCACCAGATCCAGAGAGGTGGCTCCCCAAAACGT
TGCGATCGGGTTATCGGAAGAAGAAAGTAAAACGGGATCAAGCGCCCTTC
CGGGGTTCTCAAGGAGCTGATGCGGCGTCAGCTGAAGCTGCTGCGCAGAC
CTTGGCGGACAAGGCCTCCTCCAAGGCCTCCTCTGCTTCAACCAATACCT
TACCGCCAAGAAGTCGGCCACGAATGCAAAGAAGAAAGAAAGGTCGGAAA
TAG

Coding sequence (CDS) from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330-

>Gcaud9303.t1 ID=Gcaud9303.t1|Name=Gcaud9303.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2103bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:5228..7330- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCTCTGAGCTTCAAGATGGTGCTGTGGACGAACTTCAACAGCT
CTTCAATCGAGGACAGTACGAGACCGTATTAAACCGCGTCAACCAGTTTC
GGAAGCGGAACAAGAAACGATCCCCGTCAGTGAGCCACATTTTGGATGCC
GCCCGTGCGTTCTCATTGATTCATCTCGGCCGAGCAGATGAAGCGCTTCC
GTCCATAGAGGCCCTTTTGCAAACTAAATCACCACCGTTTAAGGAACAGC
TTCTGTACGCTAAGGCCTACGCTGCGTGGGCTATAAACGAACGTCTCGTT
CAAGCAATGGATACAACGGCTCCTATGCACGGCCAAGATGTACAAAAGCT
GAAAGCGCAGCTTCTTTATCGAGCAGGACGTTATGATGATGCAGCTAATC
TGTATGAACGCCTTCTCACCCAAGCACGCAACACTCTCAGAGAGAAAAAA
GAGCCCGCTGCGACTTCCCGATGGAGATTGCCAGGAATCACTGCGAGGGC
CACACAAGTCGCTTCCCCAGTGACAGCCGCGGAGCTGGAACAGTTGACAA
GCGCTGTTAACGAACTTGCAACAAACGCCATGGCTTCGATGATACTCGCC
CGAACGCATGAGAAGCTACCTTCCATCCAAGATGGACTTCGACCAAGTTA
CGAAATCGAATACAACGCCGCATGTAGCCACATAGCGCTAGAAGATTTCG
AGAACGCCCAAGCTTGTTTAGAGAAGGCAGAAGCTTTAATTAATTCAGAA
CTTGACGAGGAAGACGATGATATTGAAGAAGCAACCGCTCCGCTTTTTGT
GCAACAAGCGTATCTGAATCACATGGCAGGAGATATTGAAGCAGCGAAAC
AATCGTACTACGAAGTTGTTAATGGAAGGAGATGTGATGCCGCATCACTA
GCTGTGGCAGCGAACAATCTTACAGTTGCGATTGGACAACTTGCCCTCGG
GAAAGCTACCCTTTCTGTTGCACAAGACGGTACTAGATCGTTATCAAAGC
AACAACATGAAGCGCTAGTTGAAGGACTGAAAAAAATGAAGACCACTGCA
AGCAGAAATGTTATACGAAAGCTTACTTCGCATCAACGGCAAGCAATGGG
TAGGAATCGAGCTGTACTTTTTGTGCAGATGGGCAGACTTGATGCCTGTC
GTTCTGAGATCGAAATGTTGAAAGTGCATTATCCTGATGATGCTCTTGTA
CGCCTTCTTGAGGCTAGTCTGCAAGCAAAGAAAGGACAGCTACAGAATGC
TGACCAGTTGCTTTCAGAAGCTGCAGACACGCCAGTAATTCGCGCTGCTA
GAGTTCAACTAGCTGCTTCGCATGGTGAAAAGGAAAGGGCCGCTGAGCTT
CTTCAGAAACTTTTCCCAGACAGTCCCGCCGCAGTTCGCACAGCCGCTTC
GTTCCTAGAACAAAGCAATCAAGTACAGGATGGCATAGCTCTTCTCAAAG
AGTTTGTTTCAAACGCAAGCGCTGATCTGAAAGCAAGTGCAAACCGTGAA
CTAGCTGCACTGCTTCTTCGAAACGGCTTCTATCGAGAAAGTGCCGAAAT
CCTTCGAGATTGCATAAAGGCTTCTAGAAGCGATCCTCTTGCTACTGCAC
AGCTAGCGGTAGCTACATCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCATTACCGGGTACGAGCTTGCGTACAACGGGAGAAGATGCCGA
ACGATTGGAACAGCTTCCTCCTCCAAAAAGAAAGCACTTATCCAATCGAA
CTTTGGACGCCTCGAACGATGCGGAGGATAAACTGCTCACCGCGACTCCT
CGCCGAGACAAGAAGAAGAAACCAAAGAAGAAGAAATTGCCCAAGAACTA
TGATCCAGACGGCCCACCACCAGATCCAGAGAGGTGGCTCCCCAAAACGT
TGCGATCGGGTTATCGGAAGAAGAAAGTAAAACGGGATCAAGCGCCCTTC
CGGGGTTCTCAAGGAGCTGATGCGGCGTCAGCTGAAGCTGCTGCGCAGAC
CTTGGCGGACAAGGCCTCCTCCAAGGCCTCCTCTGCTTCAACCAATACCT
TACCGCCAAGAAGTCGGCCACGAATGCAAAGAAGAAAGAAAGGTCGGAAA
TAG