Gcaud1448.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1448.t1
Unique NameGcaud1448.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:10210..11541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G280
Preferred nameTAF7
PFAMsTAFII55_N
Max annot lvl2759|Eukaryota
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Evalue1.62e-15
EggNOG OGsCOG5414@1|root,KOG4011@2759|Eukaryota
Descriptionhistone acetyltransferase binding
COG categoryK
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1448Gcaud1448Gracilaria caudata M_176_S67 malegeneNODE_1021_length_14946_cov_4.146752 10210..11541 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1.stop1Gcaud1448.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1021_length_14946_cov_4.146752 10210..10212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1.CDS1Gcaud1448.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1021_length_14946_cov_4.146752 10210..11541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1.exon1Gcaud1448.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1021_length_14946_cov_4.146752 10210..11541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1.start1Gcaud1448.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1021_length_14946_cov_4.146752 11539..11541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1Gcaud1448.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1021_length_14946_cov_4.146752 10210..11541 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp
MNGAVIAIMPVPVCFFATVPAILVYQDVPFCWRCRPVYWVRAIFPPFPLL
LFFNRTSASLLTKTYTVYDIEICNRALGRAVTALHARTAMNEQQYILRLP
QPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPA
SLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGIT
PATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKKTQENPTE
EEEVVIEEETVNAQPGKNAVDSSKNAASSEASGAGASAGKPPLPSESPPL
PTPMDVHPSPPVDTPGPYTPQPFTPQPFTPTPFTPIDTPGPDGEEDDDDD
DDDDDDDDDAINADMADMVDQIMEDKEDIAKRRIERIKLDQSIKDQKAKI
ADLEAQAEKAPNPVLKKRFLSKRPELQTELTELEKHRQELGEE*
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spliced messenger RNA

>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:10210..11541- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGCGCAGTTATTGCTATTATGCCAGTGCCGGTATGTTTCTTCGC
CACCGTCCCGGCCATACTCGTTTACCAAGACGTGCCCTTTTGCTGGAGGT
GCCGGCCTGTTTACTGGGTTCGCGCCATATTTCCACCGTTCCCGCTTTTG
CTTTTCTTCAACAGAACTTCCGCCAGCCTCTTAACTAAAACCTACACAGT
TTACGACATCGAAATTTGCAACCGGGCGCTGGGCCGTGCGGTAACGGCAT
TACATGCGCGTACTGCCATGAATGAACAACAATACATTCTGCGTCTTCCG
CAACCGCTCGTTGAACCTATGCGTTTTGCGCTTTCCAGCAACAAGAAACG
TGAGGGCGCTGGTGAAGACCGGAAACCAAGCACATTTCAAATCAACTTCA
AGGATGAACGTAACGCTGTGTTCACAATCGAAGGCAAGGACTACCCAGCG
TCACTAATGGATTTGCCATGCATTGTGGAAACGCACAAGACTGCAGACAA
ACGCACGTTCTACAAAAGTGGCGATCTTCATCAGGTCCTGGTTGTTCGCA
TGCCAGACGAGACCCCTCCAAAGGAAACCCGCTTACGTGATGGAATTACG
CCAGCGACTAAAGGCGCTGCAGAACGTTTGAAGCCTCCGAAGCGCTTCTT
CACGCGCGATGAGGTCGAACTGATAGAGCGCCGTATCAAGTACGTCATCG
ACCATAAGACCAGTTTTACACAGAAGAAAACGCAAGAAAATCCTACGGAG
GAAGAGGAAGTCGTCATCGAGGAAGAGACAGTCAACGCTCAACCTGGGAA
GAACGCTGTTGATTCCTCCAAAAATGCTGCTAGCAGCGAGGCAAGCGGGG
CAGGGGCTAGTGCTGGAAAGCCTCCATTGCCGTCTGAGAGCCCTCCCTTA
CCAACGCCGATGGATGTTCATCCTTCACCGCCTGTGGATACACCTGGCCC
ATATACGCCTCAACCATTTACGCCGCAACCTTTCACGCCAACGCCATTCA
CGCCTATTGACACCCCAGGTCCTGATGGAGAGGAAGACGATGATGACGAC
GACGACGACGACGATGATGATGATGACGCAATCAACGCGGATATGGCGGA
CATGGTCGACCAAATCATGGAGGACAAGGAAGATATTGCCAAGAGAAGAA
TAGAACGCATCAAGCTCGATCAAAGCATTAAAGATCAAAAGGCGAAGATT
GCCGACTTGGAGGCGCAGGCCGAGAAGGCGCCAAATCCAGTGCTGAAGAA
ACGGTTCCTTTCCAAACGACCGGAGTTGCAAACAGAGCTTACAGAGCTGG
AAAAGCACCGACAGGAACTTGGAGAAGAATGA
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protein sequence of Gcaud1448.t1

>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=444bp
MNGAVIAIMPVPVCFFATVPAILVYQDVPFCWRCRPVYWVRAIFPPFPLL
LFFNRTSASLLTKTYTVYDIEICNRALGRAVTALHARTAMNEQQYILRLP
QPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPA
SLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGIT
PATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKKTQENPTE
EEEVVIEEETVNAQPGKNAVDSSKNAASSEASGAGASAGKPPLPSESPPL
PTPMDVHPSPPVDTPGPYTPQPFTPQPFTPTPFTPIDTPGPDGEEDDDDD
DDDDDDDDDAINADMADMVDQIMEDKEDIAKRRIERIKLDQSIKDQKAKI
ADLEAQAEKAPNPVLKKRFLSKRPELQTELTELEKHRQELGEE*
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mRNA from alignment at NODE_1021_length_14946_cov_4.146752:10210..11541-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:10210..11541- (Gracilaria caudata M_176_S67 male)
ATGAATGGCGCAGTTATTGCTATTATGCCAGTGCCGGTATGTTTCTTCGC
CACCGTCCCGGCCATACTCGTTTACCAAGACGTGCCCTTTTGCTGGAGGT
GCCGGCCTGTTTACTGGGTTCGCGCCATATTTCCACCGTTCCCGCTTTTG
CTTTTCTTCAACAGAACTTCCGCCAGCCTCTTAACTAAAACCTACACAGT
TTACGACATCGAAATTTGCAACCGGGCGCTGGGCCGTGCGGTAACGGCAT
TACATGCGCGTACTGCCATGAATGAACAACAATACATTCTGCGTCTTCCG
CAACCGCTCGTTGAACCTATGCGTTTTGCGCTTTCCAGCAACAAGAAACG
TGAGGGCGCTGGTGAAGACCGGAAACCAAGCACATTTCAAATCAACTTCA
AGGATGAACGTAACGCTGTGTTCACAATCGAAGGCAAGGACTACCCAGCG
TCACTAATGGATTTGCCATGCATTGTGGAAACGCACAAGACTGCAGACAA
ACGCACGTTCTACAAAAGTGGCGATCTTCATCAGGTCCTGGTTGTTCGCA
TGCCAGACGAGACCCCTCCAAAGGAAACCCGCTTACGTGATGGAATTACG
CCAGCGACTAAAGGCGCTGCAGAACGTTTGAAGCCTCCGAAGCGCTTCTT
CACGCGCGATGAGGTCGAACTGATAGAGCGCCGTATCAAGTACGTCATCG
ACCATAAGACCAGTTTTACACAGAAGAAAACGCAAGAAAATCCTACGGAG
GAAGAGGAAGTCGTCATCGAGGAAGAGACAGTCAACGCTCAACCTGGGAA
GAACGCTGTTGATTCCTCCAAAAATGCTGCTAGCAGCGAGGCAAGCGGGG
CAGGGGCTAGTGCTGGAAAGCCTCCATTGCCGTCTGAGAGCCCTCCCTTA
CCAACGCCGATGGATGTTCATCCTTCACCGCCTGTGGATACACCTGGCCC
ATATACGCCTCAACCATTTACGCCGCAACCTTTCACGCCAACGCCATTCA
CGCCTATTGACACCCCAGGTCCTGATGGAGAGGAAGACGATGATGACGAC
GACGACGACGACGATGATGATGATGACGCAATCAACGCGGATATGGCGGA
CATGGTCGACCAAATCATGGAGGACAAGGAAGATATTGCCAAGAGAAGAA
TAGAACGCATCAAGCTCGATCAAAGCATTAAAGATCAAAAGGCGAAGATT
GCCGACTTGGAGGCGCAGGCCGAGAAGGCGCCAAATCCAGTGCTGAAGAA
ACGGTTCCTTTCCAAACGACCGGAGTTGCAAACAGAGCTTACAGAGCTGG
AAAAGCACCGACAGGAACTTGGAGAAGAATGA
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Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:10210..11541-

>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1332bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:10210..11541- (Gracilaria caudata M_176_S67 male)
ATGAATGGCGCAGTTATTGCTATTATGCCAGTGCCGGTATGTTTCTTCGC
CACCGTCCCGGCCATACTCGTTTACCAAGACGTGCCCTTTTGCTGGAGGT
GCCGGCCTGTTTACTGGGTTCGCGCCATATTTCCACCGTTCCCGCTTTTG
CTTTTCTTCAACAGAACTTCCGCCAGCCTCTTAACTAAAACCTACACAGT
TTACGACATCGAAATTTGCAACCGGGCGCTGGGCCGTGCGGTAACGGCAT
TACATGCGCGTACTGCCATGAATGAACAACAATACATTCTGCGTCTTCCG
CAACCGCTCGTTGAACCTATGCGTTTTGCGCTTTCCAGCAACAAGAAACG
TGAGGGCGCTGGTGAAGACCGGAAACCAAGCACATTTCAAATCAACTTCA
AGGATGAACGTAACGCTGTGTTCACAATCGAAGGCAAGGACTACCCAGCG
TCACTAATGGATTTGCCATGCATTGTGGAAACGCACAAGACTGCAGACAA
ACGCACGTTCTACAAAAGTGGCGATCTTCATCAGGTCCTGGTTGTTCGCA
TGCCAGACGAGACCCCTCCAAAGGAAACCCGCTTACGTGATGGAATTACG
CCAGCGACTAAAGGCGCTGCAGAACGTTTGAAGCCTCCGAAGCGCTTCTT
CACGCGCGATGAGGTCGAACTGATAGAGCGCCGTATCAAGTACGTCATCG
ACCATAAGACCAGTTTTACACAGAAGAAAACGCAAGAAAATCCTACGGAG
GAAGAGGAAGTCGTCATCGAGGAAGAGACAGTCAACGCTCAACCTGGGAA
GAACGCTGTTGATTCCTCCAAAAATGCTGCTAGCAGCGAGGCAAGCGGGG
CAGGGGCTAGTGCTGGAAAGCCTCCATTGCCGTCTGAGAGCCCTCCCTTA
CCAACGCCGATGGATGTTCATCCTTCACCGCCTGTGGATACACCTGGCCC
ATATACGCCTCAACCATTTACGCCGCAACCTTTCACGCCAACGCCATTCA
CGCCTATTGACACCCCAGGTCCTGATGGAGAGGAAGACGATGATGACGAC
GACGACGACGACGATGATGATGATGACGCAATCAACGCGGATATGGCGGA
CATGGTCGACCAAATCATGGAGGACAAGGAAGATATTGCCAAGAGAAGAA
TAGAACGCATCAAGCTCGATCAAAGCATTAAAGATCAAAAGGCGAAGATT
GCCGACTTGGAGGCGCAGGCCGAGAAGGCGCCAAATCCAGTGCTGAAGAA
ACGGTTCCTTTCCAAACGACCGGAGTTGCAAACAGAGCTTACAGAGCTGG
AAAAGCACCGACAGGAACTTGGAGAAGAATGA
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