Gcaud1448.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1448.t1
Unique NameGcaud1448.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length444
Homology
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 397 bits (1020), Expect = 1.680e-133
Identity = 270/355 (76.06%), Postives = 288/355 (81.13%), Query Frame = 0
Query:   90 MNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKKTQENPTEEEEVVIXXXTVNAQPGKNAVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PMDVHPSPPVDTPGPYTXXXXXXXXXXXXXXXXIDTPGPDGEEDXXXXXXXXXXXXXXXXXXXXXXXXXXMEDKEDIAKRRIERIKLDQSIKDQKAKIADLEAQAEKAPNPVLKKRFLSKRPELQTELTELEKHRQELGEE 443
            MNEQQ+ILRLPQPLVEPMRFALSSNKKREGAG+DR+ S F+I+FKDERNA+FTI+GK YPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDE  PK T+L DGITPATKGAA+R+KPP+RFFTRDEVELIERRIKYVIDHKTSFTQKKTQ+NP        XXX VNAQ  KNA D+                               PMDV      D      XXXXXXXXXXXXXXXXIDTPGPDGEEDXXXXXXXXXXXXXXXXXXXXXXXXXX  DKED+AK+RIERIKLDQSIK+QKAKIADLEAQAEK PNP+LKKR LSKRPELQTELT+LEK RQELGEE
Sbjct:    1 MNEQQFILRLPQPLVEPMRFALSSNKKREGAGDDRQASKFEIDFKDERNAIFTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDEPVPKHTQLPDGITPATKGAAKRMKPPERFFTRDEVELIERRIKYVIDHKTSFTQKKTQDNPXXXXXXXXXXXXVNAQSAKNAGDAKKSTTTPGETAAAVASAGKPPLPSETPIAPSPMDVQXXXAADXXXXXXXXXXXXXXXXXXXXXXIDTPGPDGEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKEDMAKKRIERIKLDQSIKEQKAKIADLEAQAEKVPNPILKKRLLSKRPELQTELTKLEKRRQELGEE 355          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A7S1EPS7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPS7_9RHOD)

HSP 1 Score: 142 bits (359), Expect = 1.500e-35
Identity = 75/157 (47.77%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   90 MNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPS---TFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKK 243
            M+E Q+ILRLP  L   MRF LSS   R  +   +  +    F + F ++R+A   ++G  YPA+LMDLP +VE+HKT D  T +KS D+HQVLVVR P++TPP   RL DG+TPA+KGA  R    K     +++  +E +IKYV+DHK SF QKK
Sbjct:    1 MDEDQFILRLPPELSSKMRFLLSSKSARGNSSAPKDETGTPRFNLVFLNDRHATLQVDGVLYPATLMDLPSVVESHKTFDNSTHFKSADIHQVLVVRNPNDTPPDNERLVDGLTPASKGAGVRNSIGKSDEDAEKLAAVEAQIKYVVDHKVSFVQKK 157          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A5J4Z6X8_PORPP (Transcription initiation factor TFIID subunit 7 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6X8_PORPP)

HSP 1 Score: 137 bits (346), Expect = 1.550e-32
Identity = 78/177 (44.07%), Postives = 109/177 (61.58%), Query Frame = 0
Query:   90 MNEQQYILRLPQPLVEPMRFAL---------SSNKKREGAGEDRK--------PSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKKTQENPT 249
            M+E+Q+ILRL   L + MR  L         S +    GA ++ +        P  F+I F  ER+A  T++G+ YPA+LMDLPCIVE+HK+ DK   +KS D+HQVLVVR   E  P++ +L++G+T A+KGA ER + P   FT D+V  +E +IKYV DH+ +F QK   E PT
Sbjct:    1 MDEEQFILRLTPKLAQRMRVLLGKTGTVPSSSLSASPTGAPDEVRNDAPPLPLPPKFEIQFLSERHAAVTVDGEAYPATLMDLPCIVESHKSPDKSLLFKSCDIHQVLVVREHSEPAPEDFQLQNGLTMASKGARERFRVPDPPFTHDQVSSVEVKIKYVTDHRVAFVQKPA-ETPT 176          
BLAST of Gcaud1448.t1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.580e-15
Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   93 QQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKET---------RLR-DGITPATKGAAER----LKPPKRFFTRDEVELIERRI 229
            +Q +LRLP  L E MR  ++++   EG         F    K  R   FT++GK YPA L+D+PC++ET KT DKRTF+KSGD+ Q+L+V   +    K+          RL  DG+TP TK    R     +P +  F R EV  +E ++
Sbjct:    6 RQLVLRLPDGLKEAMRERVAADTGMEGVD-------FTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 149          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A484LHF6_9ASTE (TAFII55_N domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LHF6_9ASTE)

HSP 1 Score: 82.0 bits (201), Expect = 6.500e-15
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   92 EQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAER 209
            E+Q+ILR+P  + E +   LS N   E  G D    TF    +D R+  F I  + +PASL+DLPCIVE++KT D     K+ D+ Q+++VR   +  P E   R G+TP  + A  R
Sbjct:    2 EEQFILRVPPSVAEQIDRLLSENASSEDTGLDL---TFS---EDGRSGTFVIGNERFPASLLDLPCIVESYKTYDDNVLIKTADIGQMIMVREEGDPAPDEAEYRHGLTPPMRDARRR 113          
BLAST of Gcaud1448.t1 vs. uniprot
Match: M2Y8M0_GALSU (Transcription initiation factor TFIID, subunit TAF7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8M0_GALSU)

HSP 1 Score: 86.3 bits (212), Expect = 7.380e-15
Identity = 55/152 (36.18%), Postives = 81/152 (53.29%), Query Frame = 0
Query:   90 MNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRM-PDETPPKETR----LRDGITPATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHK 236
            ++EQQ ILRLP  L   ++  L        +G+      +QI F D R+A+F  +GK Y A L+DLPC+VE+    + +  YK+ D+HQVL V   P E   ++T     L DGIT  TKGA  R +     ++ + V  +E  +K V + K
Sbjct:   16 VDEQQVILRLPPALASRVQLQLDDKL---ASGQQVLELPYQIEFIDNRHALFRYDGKTYAAVLLDLPCVVESSTLGETKKLYKNLDVHQVLQVESTPIEEAVEKTETDFCLEDGITHVTKGAKTRFRKDLPEYSAERVSYVEGLMKNVFELK 164          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A484L114_9ASTE (TAFII55_N domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L114_9ASTE)

HSP 1 Score: 82.0 bits (201), Expect = 9.800e-15
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   92 EQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAER 209
            E+Q+ILR+P  + E +   LS N   E  G D    TF    +D R+  F I  + +PASL+DLPCIVE++KT D     K+ D+ Q+++VR   +  P E   R G+TP  + A  R
Sbjct:    2 EEQFILRVPPSVAEQIDRLLSENASSEDTGLDL---TFS---EDGRSGTFVIGNERFPASLLDLPCIVESYKTYDDNVLIKTADIGQMIMVREEGDPAPDEAEYRHGLTPPMRDARRR 113          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A0K9NN68_ZOSMR (Transcription initiation factor TFIID subunit n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NN68_ZOSMR)

HSP 1 Score: 81.6 bits (200), Expect = 2.300e-14
Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 0
Query:   92 EQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQIN-----FKDE-RNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAERLKPPKRFFTRDEV--ELIERRIKYVIDHKTSF-TQKKTQENP 248
            E+Q+ILR+P  + E +   L+         ED  PST + N     F D+ RN  F +  K +PASL+DLPC+VE++KT D +T  K+ D+ Q+++VR   ++ P+    R G+TP  +    R     RF    ++  EL++R  K ++  +TS  T  + Q  P
Sbjct:    2 EEQFILRVPPSIAEHIEKLLN---------EDTSPSTSEANSLDLSFSDDGRNGSFMMGDKHFPASLVDLPCVVESYKTYDDQTLIKTADVGQMILVREEGDSAPEGMEYRHGLTPPMRDVRRR-----RFRREPDLNPELVQRVEKDLVAARTSTETSARVQNTP 153          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A6J1JHS5_CUCMA (transcription initiation factor TFIID subunit 7 isoform X1 n=3 Tax=Cucurbita maxima TaxID=3661 RepID=A0A6J1JHS5_CUCMA)

HSP 1 Score: 82.4 bits (202), Expect = 6.260e-14
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 0
Query:   59 SLLTKTYTVYDIEICNRALGRAVTALHARTAMNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAER 209
             LL    T Y+    N       + +   +   E+Q++LR+P  + E +   L+ N     A     PS      +D R+  F I    +PASL+DLPC+VE++KT D     K+ D+ Q+++VR P +  P  T  R G+TP  + A +R
Sbjct:   53 GLLKAQSTGYEKPDTNTPFKNTSSFIDFDSEFMEEQFVLRVPPSVAERIERLLNEN-----ASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKR 198          
BLAST of Gcaud1448.t1 vs. uniprot
Match: A0A0A0KSB3_CUCSA (TAFII55_N domain-containing protein n=2 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0KSB3_CUCSA)

HSP 1 Score: 82.0 bits (201), Expect = 9.850e-14
Identity = 53/176 (30.11%), Postives = 91/176 (51.70%), Query Frame = 0
Query:   48 PLLLFFNRTSASLLTKTYTVYDI--EIC------NRALGRAVTALHAR-----TAMNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDE-RNAVFTIEGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGITPATKGAAER 209
            P L    R+  S++ +    Y +  E C      NR L   +T  H+      + + E+Q++LR+P  + E +   L+ N     + +D   ++  ++F D+ R+  F I    +PASL+DLPC+VE++KT D     K+ D+ Q+++VR P +  P  T  R G+TP  + A +R
Sbjct:   41 PSLSLARRSPPSIIKRREQFYSLLCEACFKFEPNNRKL-HTITFQHSSFVNLDSEVMEEQFVLRVPPSVAERIERLLNENAS---SSDD---ASLDLSFSDDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKR 209          
The following BLAST results are available for this feature:
BLAST of Gcaud1448.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJD7_9FLOR1.680e-13376.06Transcription initiation factor TFIID subunit 7 n=... [more]
A0A7S1EPS7_9RHOD1.500e-3547.77Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z6X8_PORPP1.550e-3244.07Transcription initiation factor TFIID subunit 7 n=... [more]
D7G280_ECTSI1.580e-1537.75TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A484LHF6_9ASTE6.500e-1538.98TAFII55_N domain-containing protein n=1 Tax=Cuscut... [more]
M2Y8M0_GALSU7.380e-1536.18Transcription initiation factor TFIID, subunit TAF... [more]
A0A484L114_9ASTE9.800e-1538.98TAFII55_N domain-containing protein n=1 Tax=Cuscut... [more]
A0A0K9NN68_ZOSMR2.300e-1433.73Transcription initiation factor TFIID subunit n=1 ... [more]
A0A6J1JHS5_CUCMA6.260e-1431.13transcription initiation factor TFIID subunit 7 is... [more]
A0A0A0KSB3_CUCSA9.850e-1430.11TAFII55_N domain-containing protein n=2 Tax=Cucumi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 423..443
NoneNo IPR availableCOILSCoilCoilcoord: 386..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..363
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..443
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 37..54
IPR006751TAFII55 protein, conserved regionSMARTSM01370TAFII55_N_2coord: 91..253
e-value: 3.5E-25
score: 99.6
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 92..206
e-value: 1.8E-23
score: 83.1
IPR006751TAFII55 protein, conserved regionCDDcd08047TAF7coord: 92..229
e-value: 4.45487E-29
score: 109.666
IPR037817Transcription initiation factor TFIID subunit 7PANTHERPTHR12228TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATEDcoord: 91..441

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:10210..11541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1448.t1Gcaud1448.t1Gracilaria caudata M_176_S67 malemRNANODE_1021_length_14946_cov_4.146752 10210..11541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1448.t1 ID=Gcaud1448.t1|Name=Gcaud1448.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=444bp
MNGAVIAIMPVPVCFFATVPAILVYQDVPFCWRCRPVYWVRAIFPPFPLL
LFFNRTSASLLTKTYTVYDIEICNRALGRAVTALHARTAMNEQQYILRLP
QPLVEPMRFALSSNKKREGAGEDRKPSTFQINFKDERNAVFTIEGKDYPA
SLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETPPKETRLRDGIT
PATKGAAERLKPPKRFFTRDEVELIERRIKYVIDHKTSFTQKKTQENPTE
EEEVVIEEETVNAQPGKNAVDSSKNAASSEASGAGASAGKPPLPSESPPL
PTPMDVHPSPPVDTPGPYTPQPFTPQPFTPTPFTPIDTPGPDGEEDDDDD
DDDDDDDDDAINADMADMVDQIMEDKEDIAKRRIERIKLDQSIKDQKAKI
ADLEAQAEKAPNPVLKKRFLSKRPELQTELTELEKHRQELGEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
IPR037817TAF7