Gcaud2455.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2455.t1
Unique NameGcaud2455.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Homology
[Close]
BLAST of Gcaud2455.t1 vs. uniprot
Match: A0A2V3IYN8_9FLOR (WD repeat-containing protein 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYN8_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 1.020e-96
Identity = 148/237 (62.45%), Postives = 185/237 (78.06%), Query Frame = 0 
Query:    1 MSDTRLATSGHSDQRIKLWDLQQLSCVSTARLGEAVTHCVHYNGLLYAMAAHTLHVLDPRQGFSCTAAFLTLPRGSAWRSPIGALTVASDGSLAAAVGSGGVAVWDARGTWEATAYGWPNRWDGRPSRLLRALYLGQSVIVAGGGAKELLTFSRSGSYEGIIAEQRVRKAPISYINQIDSRLVVADEDGSVDYANVDSAVVDWDTVHRVFEEEHSPKTSLWHTSLAHAPYPPFRAEE 237
            + D +L ++G SDQR+KLWD+++  C+STA+L   VTHCV YN L+YAM+A TLHVLDPR GF  TAA LTLPRG+AWR+P+GAL+VA DGSL AAVGSGGVAVWDARG+WEAT +GWP RWD + S +LR++YLGQSV +AGGGAKELLTF+R+G YEGIIAEQ VR+ PIS++  +D  L+VA +DGS+D   ++ A VDWDTV+RV+E+E         T    APYPP R EE
Sbjct:  224 LEDDKLVSNGSSDQRVKLWDMRRSVCLSTAKLRNTVTHCVEYNALIYAMSAGTLHVLDPRVGFGSTAATLTLPRGAAWRAPVGALSVADDGSLVAAVGSGGVAVWDARGSWEATGFGWPKRWD-KSSHVLRSVYLGQSVAIAGGGAKELLTFARNGCYEGIIAEQAVRRTPISFVGSVDDTLLVASDDGSLDRICLEQAEVDWDTVYRVYEDEVLRSNPCVATR---APYPPLRPEE 456
The following BLAST results are available for this feature:
BLAST of Gcaud2455.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IYN8_9FLOR1.020e-9662.45WD repeat-containing protein 5 n=1 Tax=Gracilariop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..225
e-value: 1.7E-10
score: 42.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 7..21
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..29
score: 9.439068
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 3..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_742_length_18867_cov_4.749521contigNODE_742_length_18867_cov_4.749521:4016..4735 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2455.t1Gcaud2455.t1Gracilaria caudata M_176_S67 malemRNANODE_742_length_18867_cov_4.749521 4016..4735 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MSDTRLATSGHSDQRIKLWDLQQLSCVSTARLGEAVTHCVHYNGLLYAMA
AHTLHVLDPRQGFSCTAAFLTLPRGSAWRSPIGALTVASDGSLAAAVGSG
GVAVWDARGTWEATAYGWPNRWDGRPSRLLRALYLGQSVIVAGGGAKELL
TFSRSGSYEGIIAEQRVRKAPISYINQIDSRLVVADEDGSVDYANVDSAV
VDWDTVHRVFEEEHSPKTSLWHTSLAHAPYPPFRAEEAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR001680WD40_repeat