Gcaud2455.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2455.t1
Unique Name	Gcaud2455.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	240

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_742_length_18867_cov_4.749521	contig	NODE_742_length_18867_cov_4.749521:4016..4735 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2455	Gcaud2455	Gracilaria caudata M_176_S67 male	gene	NODE_742_length_18867_cov_4.749521 4016..4735 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2455.t1.stop1	Gcaud2455.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_742_length_18867_cov_4.749521 4016..4018 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2455.t1.CDS1	Gcaud2455.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_742_length_18867_cov_4.749521 4016..4735 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2455.t1.exon1	Gcaud2455.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_742_length_18867_cov_4.749521 4016..4735 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2455.t1.start1	Gcaud2455.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_742_length_18867_cov_4.749521 4733..4735 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2455.t1	Gcaud2455.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_742_length_18867_cov_4.749521 4016..4735 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_742_length_18867_cov_4.749521:4016..4735-
coding sequence from alignment at NODE_742_length_18867_cov_4.749521:4016..4735-

mRNA sequence

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MSDTRLATSGHSDQRIKLWDLQQLSCVSTARLGEAVTHCVHYNGLLYAMA
AHTLHVLDPRQGFSCTAAFLTLPRGSAWRSPIGALTVASDGSLAAAVGSG
GVAVWDARGTWEATAYGWPNRWDGRPSRLLRALYLGQSVIVAGGGAKELL
TFSRSGSYEGIIAEQRVRKAPISYINQIDSRLVVADEDGSVDYANVDSAV
VDWDTVHRVFEEEHSPKTSLWHTSLAHAPYPPFRAEEAS*

spliced messenger RNA

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:4016..4735- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACACTCGACTCGCAACAAGTGGTCACTCTGATCAGCGTATCAA
ACTATGGGATCTGCAACAACTCAGCTGTGTATCCACAGCGCGACTTGGCG
AAGCAGTCACACATTGCGTTCACTACAACGGCCTTCTATACGCCATGGCC
GCACACACCTTACATGTGTTAGATCCTCGTCAGGGCTTTTCCTGCACGGC
GGCGTTTCTCACGTTGCCGAGGGGAAGTGCGTGGCGCTCGCCGATCGGCG
CCCTCACCGTGGCTTCAGACGGCAGTCTCGCCGCGGCGGTAGGCTCGGGC
GGCGTCGCTGTGTGGGATGCGCGCGGTACGTGGGAGGCCACAGCTTACGG
CTGGCCAAATCGATGGGATGGTCGCCCTTCCCGTCTGCTCCGCGCGCTGT
ACCTAGGACAGAGCGTTATCGTCGCGGGCGGCGGCGCCAAAGAATTGCTC
ACGTTCTCCCGAAGCGGGAGTTATGAGGGAATCATTGCCGAGCAACGGGT
GAGGAAGGCGCCCATATCGTATATTAACCAAATTGACAGTAGATTAGTAG
TAGCCGATGAAGATGGGAGCGTGGATTACGCGAATGTCGACAGCGCTGTG
GTAGATTGGGACACCGTTCATCGCGTGTTCGAAGAAGAGCACTCTCCAAA
GACGTCCTTGTGGCATACGTCTCTGGCTCATGCTCCATATCCACCGTTTC
GAGCCGAAGAGGCCTCGTGA

protein sequence of Gcaud2455.t1

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MSDTRLATSGHSDQRIKLWDLQQLSCVSTARLGEAVTHCVHYNGLLYAMA
AHTLHVLDPRQGFSCTAAFLTLPRGSAWRSPIGALTVASDGSLAAAVGSG
GVAVWDARGTWEATAYGWPNRWDGRPSRLLRALYLGQSVIVAGGGAKELL
TFSRSGSYEGIIAEQRVRKAPISYINQIDSRLVVADEDGSVDYANVDSAV
VDWDTVHRVFEEEHSPKTSLWHTSLAHAPYPPFRAEEAS*

mRNA from alignment at NODE_742_length_18867_cov_4.749521:4016..4735-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:4016..4735- (Gracilaria caudata M_176_S67 male)
ATGAGTGACACTCGACTCGCAACAAGTGGTCACTCTGATCAGCGTATCAA
ACTATGGGATCTGCAACAACTCAGCTGTGTATCCACAGCGCGACTTGGCG
AAGCAGTCACACATTGCGTTCACTACAACGGCCTTCTATACGCCATGGCC
GCACACACCTTACATGTGTTAGATCCTCGTCAGGGCTTTTCCTGCACGGC
GGCGTTTCTCACGTTGCCGAGGGGAAGTGCGTGGCGCTCGCCGATCGGCG
CCCTCACCGTGGCTTCAGACGGCAGTCTCGCCGCGGCGGTAGGCTCGGGC
GGCGTCGCTGTGTGGGATGCGCGCGGTACGTGGGAGGCCACAGCTTACGG
CTGGCCAAATCGATGGGATGGTCGCCCTTCCCGTCTGCTCCGCGCGCTGT
ACCTAGGACAGAGCGTTATCGTCGCGGGCGGCGGCGCCAAAGAATTGCTC
ACGTTCTCCCGAAGCGGGAGTTATGAGGGAATCATTGCCGAGCAACGGGT
GAGGAAGGCGCCCATATCGTATATTAACCAAATTGACAGTAGATTAGTAG
TAGCCGATGAAGATGGGAGCGTGGATTACGCGAATGTCGACAGCGCTGTG
GTAGATTGGGACACCGTTCATCGCGTGTTCGAAGAAGAGCACTCTCCAAA
GACGTCCTTGTGGCATACGTCTCTGGCTCATGCTCCATATCCACCGTTTC
GAGCCGAAGAGGCCTCGTGA

Coding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:4016..4735-

>Gcaud2455.t1 ID=Gcaud2455.t1|Name=Gcaud2455.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:4016..4735- (Gracilaria caudata M_176_S67 male)
ATGAGTGACACTCGACTCGCAACAAGTGGTCACTCTGATCAGCGTATCAA
ACTATGGGATCTGCAACAACTCAGCTGTGTATCCACAGCGCGACTTGGCG
AAGCAGTCACACATTGCGTTCACTACAACGGCCTTCTATACGCCATGGCC
GCACACACCTTACATGTGTTAGATCCTCGTCAGGGCTTTTCCTGCACGGC
GGCGTTTCTCACGTTGCCGAGGGGAAGTGCGTGGCGCTCGCCGATCGGCG
CCCTCACCGTGGCTTCAGACGGCAGTCTCGCCGCGGCGGTAGGCTCGGGC
GGCGTCGCTGTGTGGGATGCGCGCGGTACGTGGGAGGCCACAGCTTACGG
CTGGCCAAATCGATGGGATGGTCGCCCTTCCCGTCTGCTCCGCGCGCTGT
ACCTAGGACAGAGCGTTATCGTCGCGGGCGGCGGCGCCAAAGAATTGCTC
ACGTTCTCCCGAAGCGGGAGTTATGAGGGAATCATTGCCGAGCAACGGGT
GAGGAAGGCGCCCATATCGTATATTAACCAAATTGACAGTAGATTAGTAG
TAGCCGATGAAGATGGGAGCGTGGATTACGCGAATGTCGACAGCGCTGTG
GTAGATTGGGACACCGTTCATCGCGTGTTCGAAGAAGAGCACTCTCCAAA
GACGTCCTTGTGGCATACGTCTCTGGCTCATGCTCCATATCCACCGTTTC
GAGCCGAAGAGGCCTCGTGA