Gcaud3005.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3005.t1
Unique Name	Gcaud3005.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_117_length_47832_cov_4.546323	contig	NODE_117_length_47832_cov_4.546323:6260..7177 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR304CT
PFAMs	His_Phos_1
Max annot lvl	2759\|Eukaryota
Evalue	2.67e-59
EggNOG OGs	28IES@1\|root,2QQRI@2759\|Eukaryota
Description	Histidine phosphatase superfamily (branch 1)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3005	Gcaud3005	Gracilaria caudata M_176_S67 male	gene	NODE_117_length_47832_cov_4.546323 6260..7177 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3005.t1.stop1	Gcaud3005.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_117_length_47832_cov_4.546323 6260..6262 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3005.t1.CDS1	Gcaud3005.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_117_length_47832_cov_4.546323 6260..7177 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3005.t1.exon1	Gcaud3005.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_117_length_47832_cov_4.546323 6260..7177 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3005.t1.start1	Gcaud3005.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_117_length_47832_cov_4.546323 7175..7177 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3005.t1	Gcaud3005.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_117_length_47832_cov_4.546323 6260..7177 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_117_length_47832_cov_4.546323:6260..7177-
coding sequence from alignment at NODE_117_length_47832_cov_4.546323:6260..7177-

mRNA sequence

>Gcaud3005.t1 ID=Gcaud3005.t1|Name=Gcaud3005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MALCTDFQSLTFVPNPLPSKSHRQTGRIRGNRFICIASISRRQFLSVSVG
TVATLFAPCESRAVSGLHIFPLHESLTNEYYLMRACETVSDATRVINSNP
VDKLSLEKHSLTTRGVNQAVRASEALLKEGLSSDAWIWPSVTISAFETAE
IVASQLRIRRERIVPEFSFLDARGVGALDGGTASDVRRIIVENDGKDSNW
RPQAGDDGTPNDSSQDVFVRVTQLLNKLETQYFGENIIIVSPDSDPLSIL
QATMTGQDLTNHHQLEYMPGEVRRVEELVTDMYGKAIIQPQAIVLSKPGE
PMRVA*

spliced messenger RNA

>Gcaud3005.t1 ID=Gcaud3005.t1|Name=Gcaud3005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:6260..7177- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTATGCACCGACTTTCAATCCTTAACTTTTGTTCCAAACCCGCT
TCCCTCCAAGTCTCATCGTCAGACTGGACGTATACGCGGTAATCGTTTTA
TCTGCATCGCATCCATTTCTCGTCGTCAATTTCTATCTGTATCCGTAGGC
ACTGTCGCCACCCTGTTCGCGCCATGCGAATCGAGAGCTGTATCGGGGCT
ACATATTTTTCCGCTCCATGAAAGCCTGACAAACGAATATTACTTGATGC
GAGCTTGTGAGACCGTTTCTGATGCTACCAGAGTAATCAACTCAAATCCC
GTTGACAAGCTTTCACTTGAGAAACATTCGCTGACAACAAGAGGTGTAAA
TCAAGCTGTTCGAGCTTCGGAAGCACTGCTGAAGGAGGGACTTTCTAGCG
ACGCATGGATCTGGCCCAGTGTAACTATCAGCGCTTTTGAAACCGCCGAA
ATTGTGGCTAGTCAACTTCGCATTCGCCGGGAGCGAATCGTCCCAGAATT
CAGCTTTCTTGACGCAAGGGGGGTCGGAGCTCTTGATGGTGGGACAGCAT
CTGATGTGCGTCGCATAATTGTTGAAAACGATGGAAAAGATTCCAATTGG
AGACCTCAAGCTGGAGATGACGGTACCCCTAATGACTCTTCTCAAGACGT
CTTTGTAAGAGTCACACAGCTGTTGAACAAACTGGAAACTCAATACTTCG
GAGAGAACATCATCATAGTGTCACCAGATTCTGATCCTCTCAGTATTCTC
CAAGCGACTATGACTGGCCAAGACTTAACCAACCACCACCAGCTTGAGTA
TATGCCAGGAGAAGTGAGGAGAGTGGAAGAACTTGTTACAGACATGTACG
GGAAAGCAATCATTCAGCCGCAAGCCATAGTTCTTTCAAAGCCTGGTGAG
CCGATGCGAGTTGCATAA

protein sequence of Gcaud3005.t1

>Gcaud3005.t1 ID=Gcaud3005.t1|Name=Gcaud3005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MALCTDFQSLTFVPNPLPSKSHRQTGRIRGNRFICIASISRRQFLSVSVG
TVATLFAPCESRAVSGLHIFPLHESLTNEYYLMRACETVSDATRVINSNP
VDKLSLEKHSLTTRGVNQAVRASEALLKEGLSSDAWIWPSVTISAFETAE
IVASQLRIRRERIVPEFSFLDARGVGALDGGTASDVRRIIVENDGKDSNW
RPQAGDDGTPNDSSQDVFVRVTQLLNKLETQYFGENIIIVSPDSDPLSIL
QATMTGQDLTNHHQLEYMPGEVRRVEELVTDMYGKAIIQPQAIVLSKPGE
PMRVA*

mRNA from alignment at NODE_117_length_47832_cov_4.546323:6260..7177-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3005.t1 ID=Gcaud3005.t1|Name=Gcaud3005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:6260..7177- (Gracilaria caudata M_176_S67 male)
ATGGCGTTATGCACCGACTTTCAATCCTTAACTTTTGTTCCAAACCCGCT
TCCCTCCAAGTCTCATCGTCAGACTGGACGTATACGCGGTAATCGTTTTA
TCTGCATCGCATCCATTTCTCGTCGTCAATTTCTATCTGTATCCGTAGGC
ACTGTCGCCACCCTGTTCGCGCCATGCGAATCGAGAGCTGTATCGGGGCT
ACATATTTTTCCGCTCCATGAAAGCCTGACAAACGAATATTACTTGATGC
GAGCTTGTGAGACCGTTTCTGATGCTACCAGAGTAATCAACTCAAATCCC
GTTGACAAGCTTTCACTTGAGAAACATTCGCTGACAACAAGAGGTGTAAA
TCAAGCTGTTCGAGCTTCGGAAGCACTGCTGAAGGAGGGACTTTCTAGCG
ACGCATGGATCTGGCCCAGTGTAACTATCAGCGCTTTTGAAACCGCCGAA
ATTGTGGCTAGTCAACTTCGCATTCGCCGGGAGCGAATCGTCCCAGAATT
CAGCTTTCTTGACGCAAGGGGGGTCGGAGCTCTTGATGGTGGGACAGCAT
CTGATGTGCGTCGCATAATTGTTGAAAACGATGGAAAAGATTCCAATTGG
AGACCTCAAGCTGGAGATGACGGTACCCCTAATGACTCTTCTCAAGACGT
CTTTGTAAGAGTCACACAGCTGTTGAACAAACTGGAAACTCAATACTTCG
GAGAGAACATCATCATAGTGTCACCAGATTCTGATCCTCTCAGTATTCTC
CAAGCGACTATGACTGGCCAAGACTTAACCAACCACCACCAGCTTGAGTA
TATGCCAGGAGAAGTGAGGAGAGTGGAAGAACTTGTTACAGACATGTACG
GGAAAGCAATCATTCAGCCGCAAGCCATAGTTCTTTCAAAGCCTGGTGAG
CCGATGCGAGTTGCATAA

Coding sequence (CDS) from alignment at NODE_117_length_47832_cov_4.546323:6260..7177-

>Gcaud3005.t1 ID=Gcaud3005.t1|Name=Gcaud3005.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_117_length_47832_cov_4.546323:6260..7177- (Gracilaria caudata M_176_S67 male)
ATGGCGTTATGCACCGACTTTCAATCCTTAACTTTTGTTCCAAACCCGCT
TCCCTCCAAGTCTCATCGTCAGACTGGACGTATACGCGGTAATCGTTTTA
TCTGCATCGCATCCATTTCTCGTCGTCAATTTCTATCTGTATCCGTAGGC
ACTGTCGCCACCCTGTTCGCGCCATGCGAATCGAGAGCTGTATCGGGGCT
ACATATTTTTCCGCTCCATGAAAGCCTGACAAACGAATATTACTTGATGC
GAGCTTGTGAGACCGTTTCTGATGCTACCAGAGTAATCAACTCAAATCCC
GTTGACAAGCTTTCACTTGAGAAACATTCGCTGACAACAAGAGGTGTAAA
TCAAGCTGTTCGAGCTTCGGAAGCACTGCTGAAGGAGGGACTTTCTAGCG
ACGCATGGATCTGGCCCAGTGTAACTATCAGCGCTTTTGAAACCGCCGAA
ATTGTGGCTAGTCAACTTCGCATTCGCCGGGAGCGAATCGTCCCAGAATT
CAGCTTTCTTGACGCAAGGGGGGTCGGAGCTCTTGATGGTGGGACAGCAT
CTGATGTGCGTCGCATAATTGTTGAAAACGATGGAAAAGATTCCAATTGG
AGACCTCAAGCTGGAGATGACGGTACCCCTAATGACTCTTCTCAAGACGT
CTTTGTAAGAGTCACACAGCTGTTGAACAAACTGGAAACTCAATACTTCG
GAGAGAACATCATCATAGTGTCACCAGATTCTGATCCTCTCAGTATTCTC
CAAGCGACTATGACTGGCCAAGACTTAACCAACCACCACCAGCTTGAGTA
TATGCCAGGAGAAGTGAGGAGAGTGGAAGAACTTGTTACAGACATGTACG
GGAAAGCAATCATTCAGCCGCAAGCCATAGTTCTTTCAAAGCCTGGTGAG
CCGATGCGAGTTGCATAA