Gcaud1429.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1429.t1
Unique Name	Gcaud1429.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_674_length_19871_cov_4.599949	contig	NODE_674_length_19871_cov_4.599949:18116..19168 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1429	Gcaud1429	Gracilaria caudata M_176_S67 male	gene	NODE_674_length_19871_cov_4.599949 18116..19168 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1429.t1.stop1	Gcaud1429.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_674_length_19871_cov_4.599949 18116..18118 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1429.t1.CDS1	Gcaud1429.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_674_length_19871_cov_4.599949 18116..19168 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1429.t1.exon1	Gcaud1429.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_674_length_19871_cov_4.599949 18116..19168 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1429.t1.start1	Gcaud1429.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_674_length_19871_cov_4.599949 19166..19168 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1429.t1	Gcaud1429.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_674_length_19871_cov_4.599949 18116..19168 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_674_length_19871_cov_4.599949:18116..19168-
coding sequence from alignment at NODE_674_length_19871_cov_4.599949:18116..19168-

mRNA sequence

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MTQLVFTVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRV
IQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSFPTEREVVD
PLYEALSFSSLEVEANGLATFFEGSIGSETGMVQCNAKLFSFNVGIEHNE
TLTNRSFQWKCDRFCVAIFSEGTSVFFSTLLARLSENPEMRPESAVGYWT
DLEFDVSDKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSST
VLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRTL
VQFDNRPEGGAAFVKSWSDGDKQSVYVTSDREHSPSLESNSEFGSQELKA
*

spliced messenger RNA

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:18116..19168- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGCTCGTATTCACAGTGATCAAGGCATTTGTGGAACTTATGTT
TGTGTCATCAGTGTTGCTCCTTCACGTTCTTGCAGAATGCCGCCTTCTCT
CAAATGGGAAAGCGTTGAGTATTAGATGGCATTCTCGTCGAATTCGTGTC
ATCCAAGTGGTTGCTTTGGCGATGTTACTGTCGTTGGAAACGCTTATATC
GTTCTTTACAAGAGACTTTCTTGCAGCCATTACGTCACAGCAAGATTGTG
TTACGCTTTCAGCAAGGAACAGTTTTCCTACAGAAAGAGAGGTAGTAGAC
CCTCTGTATGAGGCGTTATCATTTAGTAGTCTGGAAGTTGAGGCAAATGG
TCTGGCAACATTTTTCGAAGGAAGCATTGGATCGGAAACTGGAATGGTTC
AATGCAACGCGAAGTTGTTCTCTTTCAATGTTGGAATTGAACACAACGAA
ACTTTGACGAACAGAAGTTTCCAGTGGAAATGCGATAGGTTTTGTGTTGC
AATTTTTTCAGAGGGAACTTCTGTTTTTTTCTCCACCTTACTGGCGCGTC
TCAGTGAAAACCCTGAAATGAGGCCTGAAAGTGCTGTAGGATATTGGACA
GATCTTGAATTTGACGTAAGCGACAAGATTGAAACCATTGCTGACTTGTT
ATTGCATTCCTACCAGACGGCTGTAACTGATTTACTGGATTTGAGGAGAC
TGTTTTTCAGCCAGAGAGGAAGGACGACATGTGAAACCATGAGTTCCACA
GTGCTTCAAACAGTACTACCGCTATGGGTTCTGATCTTCATAGCTTCCGT
GTGGATTTCGTCGCTAGCATTGTTTGTGATGACTCGATTTTGCAAGAGGG
GGGTATTTTACGACATGCGTAATCCCTCGCACTGGGCGAATAGAACTTTG
GTGCAATTTGACAACAGGCCAGAAGGAGGGGCTGCGTTCGTGAAAAGCTG
GAGTGATGGGGACAAGCAATCAGTTTATGTGACGTCGGACAGGGAGCACT
CGCCCTCGCTTGAGTCAAATAGCGAATTTGGGTCACAAGAATTGAAGGCT
TGA

protein sequence of Gcaud1429.t1

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MTQLVFTVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRV
IQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSFPTEREVVD
PLYEALSFSSLEVEANGLATFFEGSIGSETGMVQCNAKLFSFNVGIEHNE
TLTNRSFQWKCDRFCVAIFSEGTSVFFSTLLARLSENPEMRPESAVGYWT
DLEFDVSDKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSST
VLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRTL
VQFDNRPEGGAAFVKSWSDGDKQSVYVTSDREHSPSLESNSEFGSQELKA
*

mRNA from alignment at NODE_674_length_19871_cov_4.599949:18116..19168-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:18116..19168- (Gracilaria caudata M_176_S67 male)
ATGACGCAGCTCGTATTCACAGTGATCAAGGCATTTGTGGAACTTATGTT
TGTGTCATCAGTGTTGCTCCTTCACGTTCTTGCAGAATGCCGCCTTCTCT
CAAATGGGAAAGCGTTGAGTATTAGATGGCATTCTCGTCGAATTCGTGTC
ATCCAAGTGGTTGCTTTGGCGATGTTACTGTCGTTGGAAACGCTTATATC
GTTCTTTACAAGAGACTTTCTTGCAGCCATTACGTCACAGCAAGATTGTG
TTACGCTTTCAGCAAGGAACAGTTTTCCTACAGAAAGAGAGGTAGTAGAC
CCTCTGTATGAGGCGTTATCATTTAGTAGTCTGGAAGTTGAGGCAAATGG
TCTGGCAACATTTTTCGAAGGAAGCATTGGATCGGAAACTGGAATGGTTC
AATGCAACGCGAAGTTGTTCTCTTTCAATGTTGGAATTGAACACAACGAA
ACTTTGACGAACAGAAGTTTCCAGTGGAAATGCGATAGGTTTTGTGTTGC
AATTTTTTCAGAGGGAACTTCTGTTTTTTTCTCCACCTTACTGGCGCGTC
TCAGTGAAAACCCTGAAATGAGGCCTGAAAGTGCTGTAGGATATTGGACA
GATCTTGAATTTGACGTAAGCGACAAGATTGAAACCATTGCTGACTTGTT
ATTGCATTCCTACCAGACGGCTGTAACTGATTTACTGGATTTGAGGAGAC
TGTTTTTCAGCCAGAGAGGAAGGACGACATGTGAAACCATGAGTTCCACA
GTGCTTCAAACAGTACTACCGCTATGGGTTCTGATCTTCATAGCTTCCGT
GTGGATTTCGTCGCTAGCATTGTTTGTGATGACTCGATTTTGCAAGAGGG
GGGTATTTTACGACATGCGTAATCCCTCGCACTGGGCGAATAGAACTTTG
GTGCAATTTGACAACAGGCCAGAAGGAGGGGCTGCGTTCGTGAAAAGCTG
GAGTGATGGGGACAAGCAATCAGTTTATGTGACGTCGGACAGGGAGCACT
CGCCCTCGCTTGAGTCAAATAGCGAATTTGGGTCACAAGAATTGAAGGCT
TGA

Coding sequence (CDS) from alignment at NODE_674_length_19871_cov_4.599949:18116..19168-

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_674_length_19871_cov_4.599949:18116..19168- (Gracilaria caudata M_176_S67 male)
ATGACGCAGCTCGTATTCACAGTGATCAAGGCATTTGTGGAACTTATGTT
TGTGTCATCAGTGTTGCTCCTTCACGTTCTTGCAGAATGCCGCCTTCTCT
CAAATGGGAAAGCGTTGAGTATTAGATGGCATTCTCGTCGAATTCGTGTC
ATCCAAGTGGTTGCTTTGGCGATGTTACTGTCGTTGGAAACGCTTATATC
GTTCTTTACAAGAGACTTTCTTGCAGCCATTACGTCACAGCAAGATTGTG
TTACGCTTTCAGCAAGGAACAGTTTTCCTACAGAAAGAGAGGTAGTAGAC
CCTCTGTATGAGGCGTTATCATTTAGTAGTCTGGAAGTTGAGGCAAATGG
TCTGGCAACATTTTTCGAAGGAAGCATTGGATCGGAAACTGGAATGGTTC
AATGCAACGCGAAGTTGTTCTCTTTCAATGTTGGAATTGAACACAACGAA
ACTTTGACGAACAGAAGTTTCCAGTGGAAATGCGATAGGTTTTGTGTTGC
AATTTTTTCAGAGGGAACTTCTGTTTTTTTCTCCACCTTACTGGCGCGTC
TCAGTGAAAACCCTGAAATGAGGCCTGAAAGTGCTGTAGGATATTGGACA
GATCTTGAATTTGACGTAAGCGACAAGATTGAAACCATTGCTGACTTGTT
ATTGCATTCCTACCAGACGGCTGTAACTGATTTACTGGATTTGAGGAGAC
TGTTTTTCAGCCAGAGAGGAAGGACGACATGTGAAACCATGAGTTCCACA
GTGCTTCAAACAGTACTACCGCTATGGGTTCTGATCTTCATAGCTTCCGT
GTGGATTTCGTCGCTAGCATTGTTTGTGATGACTCGATTTTGCAAGAGGG
GGGTATTTTACGACATGCGTAATCCCTCGCACTGGGCGAATAGAACTTTG
GTGCAATTTGACAACAGGCCAGAAGGAGGGGCTGCGTTCGTGAAAAGCTG
GAGTGATGGGGACAAGCAATCAGTTTATGTGACGTCGGACAGGGAGCACT
CGCCCTCGCTTGAGTCAAATAGCGAATTTGGGTCACAAGAATTGAAGGCT
TGA