Gcaud1429.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1429.t1
Unique NameGcaud1429.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length351
Homology
BLAST of Gcaud1429.t1 vs. uniprot
Match: A0A2V3IUG0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG0_9FLOR)

HSP 1 Score: 151 bits (382), Expect = 5.620e-39
Identity = 114/340 (33.53%), Postives = 179/340 (52.65%), Query Frame = 0
Query:    2 TQLVFTVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRVIQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSF-----PTEREVVDPLYEALSFSSLEVEANGLATFFEGSIGSETGMVQCNAK-LFSFNVGIEHNETLTNRSFQWK-C-DRFC--VAIFSEGTSVFFSTLLARLSENPEMRPESAVGYWTDLEFDVSDKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSSTVLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRT---LVQFDNRPEGGAAFVKSWSDGDKQSVYVT 328
            TQL+FT I A  E+  VS+  +L  LAEC  L+  + + +  H R  RV+QVVA+   ++LE LIS FT+     I S+Q+C  ++   +F       ER + +   E + +S L   ++ +     G    +TG VQCN + +F +      +E  + R    K C ++FC  V++   GT +F S  + R S + +       G WT+L F+V   ++ +A  +L  Y+  V D LD+RR    Q  +  C+  S     +VLP W+L  I S+W +   LF++TR  KRGVFYD+ NPSHWA  T   L+Q D R    +AF++S +    + ++V+
Sbjct:   25 TQLMFTAINAITEIGCVSATFVLIGLAECYALTTHRRVRLASHRRYHRVVQVVAMITFIALEVLISTFTKPHTHHIESKQNCTQVNRTENFLALNDSDERRMSE---EMVLYSCLRTNSSNIINISTGVKSEDTGAVQCNQEWIFQYENDRTDHEQFSERDEVGKQCNEQFCTLVSLDRSGTRMFLSKPVPRASFDSDNNKID--GKWTNLNFNVQIDVKIMATKVLGLYEQGVFDELDVRRRLLVQSKKQECQFSSDRKEHSVLPFWLLGLIISMWGTCAFLFILTRVLKRGVFYDIDNPSHWACITDWQLIQGDRRKH--SAFLRSTTVDGVRRIFVS 357          
BLAST of Gcaud1429.t1 vs. uniprot
Match: A0A2V3J6F3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 97.1 bits (240), Expect = 4.250e-19
Identity = 86/341 (25.22%), Postives = 150/341 (43.99%), Query Frame = 0
Query:    7 TVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRVIQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSFPTEREVVDPLYEALSFSSLEVEA----NGLATFFEGSIGSETGMVQCNAK-LFSFNVGIEHNETLTNRSFQWKCDRFCVAIFSEGTSVFFSTLLARLS--------ENPEMRPESAVGYWTDLEFDVSDKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSSTVLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRTLVQFDNRPEGGAAFVKSWSDGDKQSVYVTSDREHS 334
            TV+    EL  +S + +L+ L EC+ L  G+++ +R H RR R++ VV L    +LE + SF+            +C+T S  NS     +      + L  S + VE     NG  T F G+  S T  V+C+ + +++  +G E +E +            CV+   EG +  F      LS        +   + P++     T+L F     +   A    +++   +     LRR+ +S      C         T +PL +++ +A+VW  +LA+F      +RGVF+ + +P HWA R++   D+ P G    +      DK  V++++    S
Sbjct:   16 TVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITAS--NSVKDSGDST----QFLRASDILVECRRLDNGTITQFGGNFSSRTQQVECSTEAMYTHPLGDETSEEIVA-----DVPFGCVSGGEEGAACVFVQQRGNLSLISAPFFLDELSILPDTLPHIITELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADD-PLGDNPVLTGLMQDDKTLVHISTSESSS 344          
BLAST of Gcaud1429.t1 vs. uniprot
Match: A0A2V3J5B4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 4.690e-15
Identity = 82/319 (25.71%), Postives = 140/319 (43.89%), Query Frame = 0
Query:    2 TQLVFTVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRVIQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSFPT-----EREVVDPLYEALSFSSLEVEANGLATFFEGSIGSETGMVQCNAK-LFSFNVGIEHNETLTNRSFQWKC--DRF-----CVAIFSEG-TSVFFSTLLARLSE---NPEMRPESAVGYWTDLEFDVS-DKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSSTVLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRTLVQ 302
            T LV T+    VEL  +S++ + + + ECR L NG  +S+  H  RI+++ ++A    + LE + S  +       ++   C+    + +F       + + V    + +  S + V   G      G+   +T  VQC AK +FS+    +      +      C  D F     C ++  +  T +  S   +  S    + E RP       T L   +  D++E+IA  LL  Y   V+D  ++RR   +   R+ C   + T   T + LW  I    +W   +  F++  F +RGVFYDM N  HWA +T+ +
Sbjct:   12 TSLVITITSLVVELACLSALFIFNAVCECRSLRNGNRVSVARHRLRIKILTILATLTFVGLEVITSANSHTKPVTESTLSPCIRSVTKQNFDNINSSFDDQTVTNGRDNIGISCVNV-GGGEVFVKNGNYSLDTLDVQCGAKPIFSYVSAEKEFLPPASPGVITHCEQDEFLNMGTCASVSLQNKTRLLISERFSEESNFEIDAEFRP-------TQLFMTIGEDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQCSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTVYR 322          
The following BLAST results are available for this feature:
BLAST of Gcaud1429.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IUG0_9FLOR5.620e-3933.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F3_9FLOR4.250e-1925.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B4_9FLOR4.690e-1525.71Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..350
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 278..350
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 256..277
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 70..255
NoneNo IPR availableTMHMMTMhelixcoord: 255..277
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_674_length_19871_cov_4.599949contigNODE_674_length_19871_cov_4.599949:18116..19168 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1429.t1Gcaud1429.t1Gracilaria caudata M_176_S67 malemRNANODE_674_length_19871_cov_4.599949 18116..19168 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1429.t1 ID=Gcaud1429.t1|Name=Gcaud1429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MTQLVFTVIKAFVELMFVSSVLLLHVLAECRLLSNGKALSIRWHSRRIRV
IQVVALAMLLSLETLISFFTRDFLAAITSQQDCVTLSARNSFPTEREVVD
PLYEALSFSSLEVEANGLATFFEGSIGSETGMVQCNAKLFSFNVGIEHNE
TLTNRSFQWKCDRFCVAIFSEGTSVFFSTLLARLSENPEMRPESAVGYWT
DLEFDVSDKIETIADLLLHSYQTAVTDLLDLRRLFFSQRGRTTCETMSST
VLQTVLPLWVLIFIASVWISSLALFVMTRFCKRGVFYDMRNPSHWANRTL
VQFDNRPEGGAAFVKSWSDGDKQSVYVTSDREHSPSLESNSEFGSQELKA
*
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