Gcaud74.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud74.t1
Unique NameGcaud74.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_670_length_19947_cov_4.237409contigNODE_670_length_19947_cov_4.237409:14844..15377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702999.1
Preferred nameMCM5
PFAMsMCM,MCM_N,MCM_OB
Max annot lvl2759|Eukaryota
KEGG koko:K02209,ko:K11592
KEGG Pathwayko03030,ko04110,ko04111,ko04113,ko05206,map03030,map04110,map04111,map04113,map05206
KEGG ModuleM00285
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000280,GO:0000347,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000781,GO:0000784,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006342,GO:0006343,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030174,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035825,GO:0036387,GO:0036388,GO:0040029,GO:0042023,GO:0042555,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045132,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051097,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051336,GO:0051346,GO:0051716,GO:0060255,GO:0060968,GO:0060969,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098687,GO:0098813,GO:0140013,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902292,GO:1902299,GO:1902315,GO:1902679,GO:1902680,GO:1902969,GO:1902975,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990837,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue6.19e-68
EggNOG OGsCOG1241@1|root,KOG0481@2759|Eukaryota
EC3.6.4.12
DescriptionDNA replication origin binding
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud74Gcaud74Gracilaria caudata M_176_S67 malegeneNODE_670_length_19947_cov_4.237409 14844..15377 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud74.t1.stop1Gcaud74.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_670_length_19947_cov_4.237409 14844..14846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud74.t1.CDS1Gcaud74.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_670_length_19947_cov_4.237409 14844..15377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud74.t1.exon1Gcaud74.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_670_length_19947_cov_4.237409 14844..15377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud74.t1.start1Gcaud74.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_670_length_19947_cov_4.237409 15375..15377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud74.t1Gcaud74.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_670_length_19947_cov_4.237409 14844..15377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud74.t1 ID=Gcaud74.t1|Name=Gcaud74.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MLSISRHPNLEQIIARSIAPEIVGHEHIKKAIAAQFFGRALDKTLPDGMR
TMGDINVLLLGDPTTAKSQMLNFAERVAPIFVYTSGKGSSAAGLTARVIK
DKAHGEFHLEGGAMVLADGGLVCIDELDKMRLQDRVAIHEAMEQQTISIA
KAGGVHVHESFLTHSIQVCASDNVGRE*
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spliced messenger RNA

>Gcaud74.t1 ID=Gcaud74.t1|Name=Gcaud74.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:14844..15377- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAGCATTTCTCGTCATCCCAACCTCGAACAGATCATCGCGCGAAG
CATCGCCCCCGAAATAGTCGGACACGAACACATAAAGAAGGCGATTGCAG
CACAGTTTTTTGGCCGTGCTCTGGACAAGACGCTTCCTGATGGCATGCGA
ACCATGGGAGATATCAATGTGTTGCTGCTGGGAGACCCAACTACGGCAAA
GAGTCAGATGCTGAATTTCGCCGAGCGAGTGGCCCCAATTTTTGTGTATA
CCAGCGGAAAGGGAAGTTCGGCCGCGGGTTTGACCGCAAGGGTGATCAAG
GACAAAGCACACGGCGAATTCCATCTCGAAGGTGGGGCGATGGTACTAGC
CGACGGAGGCCTTGTTTGCATAGATGAACTTGACAAGATGAGACTACAAG
ACCGAGTGGCCATCCACGAAGCAATGGAACAACAGACGATCTCCATCGCA
AAAGCAGGAGGTGTTCATGTTCACGAATCGTTCCTCACACATTCCATACA
GGTTTGTGCAAGTGACAACGTCGGGCGGGAATAG
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protein sequence of Gcaud74.t1

>Gcaud74.t1 ID=Gcaud74.t1|Name=Gcaud74.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MLSISRHPNLEQIIARSIAPEIVGHEHIKKAIAAQFFGRALDKTLPDGMR
TMGDINVLLLGDPTTAKSQMLNFAERVAPIFVYTSGKGSSAAGLTARVIK
DKAHGEFHLEGGAMVLADGGLVCIDELDKMRLQDRVAIHEAMEQQTISIA
KAGGVHVHESFLTHSIQVCASDNVGRE*
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mRNA from alignment at NODE_670_length_19947_cov_4.237409:14844..15377-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud74.t1 ID=Gcaud74.t1|Name=Gcaud74.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:14844..15377- (Gracilaria caudata M_176_S67 male)
ATGCTTAGCATTTCTCGTCATCCCAACCTCGAACAGATCATCGCGCGAAG
CATCGCCCCCGAAATAGTCGGACACGAACACATAAAGAAGGCGATTGCAG
CACAGTTTTTTGGCCGTGCTCTGGACAAGACGCTTCCTGATGGCATGCGA
ACCATGGGAGATATCAATGTGTTGCTGCTGGGAGACCCAACTACGGCAAA
GAGTCAGATGCTGAATTTCGCCGAGCGAGTGGCCCCAATTTTTGTGTATA
CCAGCGGAAAGGGAAGTTCGGCCGCGGGTTTGACCGCAAGGGTGATCAAG
GACAAAGCACACGGCGAATTCCATCTCGAAGGTGGGGCGATGGTACTAGC
CGACGGAGGCCTTGTTTGCATAGATGAACTTGACAAGATGAGACTACAAG
ACCGAGTGGCCATCCACGAAGCAATGGAACAACAGACGATCTCCATCGCA
AAAGCAGGAGGTGTTCATGTTCACGAATCGTTCCTCACACATTCCATACA
GGTTTGTGCAAGTGACAACGTCGGGCGGGAATAG
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Coding sequence (CDS) from alignment at NODE_670_length_19947_cov_4.237409:14844..15377-

>Gcaud74.t1 ID=Gcaud74.t1|Name=Gcaud74.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_670_length_19947_cov_4.237409:14844..15377- (Gracilaria caudata M_176_S67 male)
ATGCTTAGCATTTCTCGTCATCCCAACCTCGAACAGATCATCGCGCGAAG
CATCGCCCCCGAAATAGTCGGACACGAACACATAAAGAAGGCGATTGCAG
CACAGTTTTTTGGCCGTGCTCTGGACAAGACGCTTCCTGATGGCATGCGA
ACCATGGGAGATATCAATGTGTTGCTGCTGGGAGACCCAACTACGGCAAA
GAGTCAGATGCTGAATTTCGCCGAGCGAGTGGCCCCAATTTTTGTGTATA
CCAGCGGAAAGGGAAGTTCGGCCGCGGGTTTGACCGCAAGGGTGATCAAG
GACAAAGCACACGGCGAATTCCATCTCGAAGGTGGGGCGATGGTACTAGC
CGACGGAGGCCTTGTTTGCATAGATGAACTTGACAAGATGAGACTACAAG
ACCGAGTGGCCATCCACGAAGCAATGGAACAACAGACGATCTCCATCGCA
AAAGCAGGAGGTGTTCATGTTCACGAATCGTTCCTCACACATTCCATACA
GGTTTGTGCAAGTGACAACGTCGGGCGGGAATAG
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