Gcaud1423.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1423.t1
Unique NameGcaud1423.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_653_length_20221_cov_4.515748contigNODE_653_length_20221_cov_4.515748:16848..17472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT504CT
PFAMsTubulin,Tubulin_C
Max annot lvl2759|Eukaryota
KEGG koko:K07374
KEGG Pathwayko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Evalue6.97e-75
EggNOG OGsCOG5023@1|root,KOG1376@2759|Eukaryota
Descriptionstructural constituent of cytoskeleton
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1423Gcaud1423Gracilaria caudata M_176_S67 malegeneNODE_653_length_20221_cov_4.515748 16848..17472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1Gcaud1423.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_653_length_20221_cov_4.515748 16848..17472 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1.start1Gcaud1423.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_653_length_20221_cov_4.515748 16848..16850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1.CDS1Gcaud1423.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_653_length_20221_cov_4.515748 16848..17170 +
Gcaud1423.t1.CDS2Gcaud1423.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_653_length_20221_cov_4.515748 17235..17472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1.exon1Gcaud1423.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_653_length_20221_cov_4.515748 16848..17170 +
Gcaud1423.t1.exon2Gcaud1423.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_653_length_20221_cov_4.515748 17235..17472 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1.intron1Gcaud1423.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_653_length_20221_cov_4.515748 17171..17234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1423.t1.stop1Gcaud1423.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_653_length_20221_cov_4.515748 17470..17472 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1423.t1 ID=Gcaud1423.t1|Name=Gcaud1423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=187bp
LLEHLDLGVALDNEAIYDICRRSLSIARPTYSNLNRLIAQVVSSLTASLL
FDGAWNVDIKKFQTGLVPSPRIHFMLSAYAPIMAKEKAHHEKSSVAEITL
VVFQPNSATFKRDVNAAVASIKSKRSIQFVEWSPTGMKIGINSQPPTLVK
DDDPAESKISVCSIADCTAIAEMFAPINATFDLMFA*
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spliced messenger RNA

>Gcaud1423.t1 ID=Gcaud1423.t1|Name=Gcaud1423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:16848..17472+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTTGAGCACCTTGATCTGGGAGTGGCTCTCGACAATGAGGCCATTTA
TGACATCTGCCGTCGTTCGTTGAGCATTGCTCGTCCGACCTACTCCAACC
TTAACCGTCTCATCGCACAGGTGGTGTCGTCCCTCACCGCTTCTCTTCTT
TTCGATGGTGCTTGGAATGTAGATATCAAAAAGTTCCAAACCGGCCTGGT
TCCCTCTCCTCGCATTCACTTTATGCTTTCTGCGTACGCGCCTATTATGG
CGAAGGAAAAGGCTCATCATGAGAAATCTAGCGTGGCTGAGATTACTTTG
GTTGTGTTTCAGCCGAACTCGGCGACTTTCAAAAGAGACGTGAACGCAGC
TGTCGCTTCCATCAAATCAAAGCGCTCTATTCAGTTTGTGGAATGGTCTC
CGACCGGTATGAAGATCGGAATCAACTCACAACCGCCTACTCTTGTGAAA
GATGATGATCCAGCCGAGTCTAAGATATCTGTTTGCTCCATTGCTGACTG
CACTGCTATTGCTGAAATGTTTGCCCCAATAAACGCCACGTTCGACCTTA
TGTTCGCTTAG
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protein sequence of Gcaud1423.t1

>Gcaud1423.t1 ID=Gcaud1423.t1|Name=Gcaud1423.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=187bp
LLEHLDLGVALDNEAIYDICRRSLSIARPTYSNLNRLIAQVVSSLTASLL
FDGAWNVDIKKFQTGLVPSPRIHFMLSAYAPIMAKEKAHHEKSSVAEITL
VVFQPNSATFKRDVNAAVASIKSKRSIQFVEWSPTGMKIGINSQPPTLVK
DDDPAESKISVCSIADCTAIAEMFAPINATFDLMFA*
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mRNA from alignment at NODE_653_length_20221_cov_4.515748:16848..17472+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1423.t1 ID=Gcaud1423.t1|Name=Gcaud1423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=625bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:16848..17472+ (Gracilaria caudata M_176_S67 male)
TTGCTTGAGCACCTTGATCTGGGAGTGGCTCTCGACAATGAGGCCATTTA
TGACATCTGCCGTCGTTCGTTGAGCATTGCTCGTCCGACCTACTCCAACC
TTAACCGTCTCATCGCACAGGTGGTGTCGTCCCTCACCGCTTCTCTTCTT
TTCGATGGTGCTTGGAATGTAGATATCAAAAAGTTCCAAACCGGCCTGGT
TCCCTCTCCTCGCATTCACTTTATGCTTTCTGCGTACGCGCCTATTATGG
CGAAGGAAAAGGCTCATCATGAGAAATCTAGCGTGGCTGAGATTACTTTG
GTTGTGTTTCAGCCGAACTCGGCGTTCGCCGAGTGCGACCCGCGCTCAGG
TCGCTACATTGCTGTGTCGCTCAACTACCGTGGTCAGGACTTTCAAAAGA
GACGTGAACGCAGCTGTCGCTTCCATCAAATCAAAGCGCTCTATTCAGTT
TGTGGAATGGTCTCCGACCGGTATGAAGATCGGAATCAACTCACAACCGC
CTACTCTTGTGAAAGATGATGATCCAGCCGAGTCTAAGATATCTGTTTGC
TCCATTGCTGACTGCACTGCTATTGCTGAAATGTTTGCCCCAATAAACGC
CACGTTCGACCTTATGTTCGCTTAG
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Coding sequence (CDS) from alignment at NODE_653_length_20221_cov_4.515748:16848..17472+

>Gcaud1423.t1 ID=Gcaud1423.t1|Name=Gcaud1423.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=561bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:16848..17472+ (Gracilaria caudata M_176_S67 male)
TTGCTTGAGCACCTTGATCTGGGAGTGGCTCTCGACAATGAGGCCATTTA
TGACATCTGCCGTCGTTCGTTGAGCATTGCTCGTCCGACCTACTCCAACC
TTAACCGTCTCATCGCACAGGTGGTGTCGTCCCTCACCGCTTCTCTTCTT
TTCGATGGTGCTTGGAATGTAGATATCAAAAAGTTCCAAACCGGCCTGGT
TCCCTCTCCTCGCATTCACTTTATGCTTTCTGCGTACGCGCCTATTATGG
CGAAGGAAAAGGCTCATCATGAGAAATCTAGCGTGGCTGAGATTACTTTG
GTTGTGTTTCAGCCGAACTCGGCGACTTTCAAAAGAGACGTGAACGCAGC
TGTCGCTTCCATCAAATCAAAGCGCTCTATTCAGTTTGTGGAATGGTCTC
CGACCGGTATGAAGATCGGAATCAACTCACAACCGCCTACTCTTGTGAAA
GATGATGATCCAGCCGAGTCTAAGATATCTGTTTGCTCCATTGCTGACTG
CACTGCTATTGCTGAAATGTTTGCCCCAATAAACGCCACGTTCGACCTTA
TGTTCGCTTAG
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