Gcaud930.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud930.t1
Unique NameGcaud930.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6481_length_1166_cov_10.688372contigNODE_6481_length_1166_cov_10.688372:466..1163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud930Gcaud930Gracilaria caudata M_176_S67 malegeneNODE_6481_length_1166_cov_10.688372 466..1163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1Gcaud930.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6481_length_1166_cov_10.688372 466..1163 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1.start1Gcaud930.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6481_length_1166_cov_10.688372 466..468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1.CDS1Gcaud930.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6481_length_1166_cov_10.688372 466..540 +
Gcaud930.t1.CDS2Gcaud930.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_6481_length_1166_cov_10.688372 621..812 +
Gcaud930.t1.CDS3Gcaud930.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_6481_length_1166_cov_10.688372 896..946 +
Gcaud930.t1.CDS4Gcaud930.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_6481_length_1166_cov_10.688372 1030..1036 +
Gcaud930.t1.CDS5Gcaud930.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_6481_length_1166_cov_10.688372 1123..1163 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1.exon1Gcaud930.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6481_length_1166_cov_10.688372 466..540 +
Gcaud930.t1.exon2Gcaud930.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_6481_length_1166_cov_10.688372 621..812 +
Gcaud930.t1.exon3Gcaud930.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_6481_length_1166_cov_10.688372 896..946 +
Gcaud930.t1.exon4Gcaud930.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_6481_length_1166_cov_10.688372 1030..1036 +
Gcaud930.t1.exon5Gcaud930.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_6481_length_1166_cov_10.688372 1123..1163 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1.intron1Gcaud930.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_6481_length_1166_cov_10.688372 541..620 +
Gcaud930.t1.intron2Gcaud930.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_6481_length_1166_cov_10.688372 813..895 +
Gcaud930.t1.intron3Gcaud930.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_6481_length_1166_cov_10.688372 947..1029 +
Gcaud930.t1.intron4Gcaud930.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_6481_length_1166_cov_10.688372 1037..1122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1.stop1Gcaud930.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6481_length_1166_cov_10.688372 1161..1163 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=122bp
MEIPHCYEKSMGYASLFLTIVNIISWTTLYQYLRASPDNIVRNPVAEEAP
LLPENDASEEEPDGASEAISRALKSKIFLSMLAAIVLAFIYPVANALLHH
DGMLRPNGGGAVRELSRISRR*
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spliced messenger RNA

>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp|location=Sequence derived from alignment at NODE_6481_length_1166_cov_10.688372:466..1163+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATACCACATTGCTACGAGAAAAGTATGGGATACGCCTCACTTTT
CCTTACAATCGTAAATATTATATCCTGGACGACATTGTACCAATATTTGA
GAGCCTCCCCAGACAATATTGTCCGcaaccccgtcgcagaagaagcaccg
ttgctgccagaaaacgatgcttctgaagaggaaccagatggagcctcaga
agccatctctcgcgcattgaaatcgaaaatctttctctccatgctggctg
ctatagttcttgcattcatatacccggttgcaaatgcattgctgcatcat
gatggaatgttgcgaccgaacggaggaggagcagtgcgagaactttcgag
aatttcaagacgatga
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protein sequence of Gcaud930.t1

>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=122bp
MEIPHCYEKSMGYASLFLTIVNIISWTTLYQYLRASPDNIVRNPVAEEAP
LLPENDASEEEPDGASEAISRALKSKIFLSMLAAIVLAFIYPVANALLHH
DGMLRPNGGGAVRELSRISRR*
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mRNA from alignment at NODE_6481_length_1166_cov_10.688372:466..1163+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=698bp|location=Sequence derived from alignment at NODE_6481_length_1166_cov_10.688372:466..1163+ (Gracilaria caudata M_176_S67 male)
ATGGAAATACCACATTGCTACGAGAAAAGTATGGGATACGCCTCACTTTT
CCTTACAATCGTAAATATTATATCCGTACGTTCGCACAAGTCGCCATTGC
GTGCGGTCTTACATAAGCGCTAACACCTCTGTTATTTTCTCCTCTCCATC
GCCAGTGGACGACATTGTACCAATATTTGAGAGCCTCCCCAGACAATATT
GTCCGcaaccccgtcgcagaagaagcaccgttgctgccagaaaacgatgc
ttctgaagaggaaccagatggagcctcagaagccatctctcgcgcattga
aatcgaaaatctttctctccatgctggctgctatagttcttgcattcgta
cgtatcacttccaacagccctgaaaggtgaacgccaaaatacttaccctt
cgtacttccttttgattccatgttcacaagatatacccggttgcaaatgc
attgctgcatcatgatggaatgttgcgaccggtaatgctgtcaattaaca
ttctgggtaacgttgttgttcctgttaatgccatagtggtgggggctgaa
ttctaccactgcagaacggaggtacgttgtggttatAATATGTTCAGAGC
TGCAGCATCgatgccgtggggctgtactaacattcgattgcattcattga
acgaaaggaggagcagtgcgagaactttcgagaatttcaagacgatga
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Coding sequence (CDS) from alignment at NODE_6481_length_1166_cov_10.688372:466..1163+

>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=366bp|location=Sequence derived from alignment at NODE_6481_length_1166_cov_10.688372:466..1163+ (Gracilaria caudata M_176_S67 male)
ATGGAAATACCACATTGCTACGAGAAAAGTATGGGATACGCCTCACTTTT
CCTTACAATCGTAAATATTATATCCTGGACGACATTGTACCAATATTTGA
GAGCCTCCCCAGACAATATTGTCCGcaaccccgtcgcagaagaagcaccg
ttgctgccagaaaacgatgcttctgaagaggaaccagatggagcctcaga
agccatctctcgcgcattgaaatcgaaaatctttctctccatgctggctg
ctatagttcttgcattcatatacccggttgcaaatgcattgctgcatcat
gatggaatgttgcgaccgaacggaggaggagcagtgcgagaactttcgag
aatttcaagacgatga
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