Gcaud930.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud930.t1
Unique NameGcaud930.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length122
Homology
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BLAST of Gcaud930.t1 vs. uniprot
Match: A0A2V3J3L9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3L9_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 9.570e-23
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 0 
Query:    1 MEIPHCYEKSMGYASLFLTIVNIISWTTLYQYLRASPDNIVRNPVAEEAPLLPEND--ASEEEPDGASE-------AISRALKSKIFLSMLAAIVLAFIYPVANALLHHDGMLRP 106
            M  PHCY+KSMGYASLFLT++NIISWT LYQ+LR S D+       EEAPLL +    +S   P    E       AI R L S IFL+++AA+ +A +YP+ NA L  DG+LRP
Sbjct:  147 MRTPHCYDKSMGYASLFLTVINIISWTVLYQFLRDSKDSDHFR--EEEAPLLSQTGFRSSINHPMDLDEPRAPIIDAIKRVLCSHIFLAVVAALAIAIVYPLGNAFLDDDGVLRP 259
The following BLAST results are available for this feature:
BLAST of Gcaud930.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3L9_9FLOR9.570e-2351.30Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 99..121
NoneNo IPR availableTMHMMTMhelixcoord: 77..99
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6481_length_1166_cov_10.688372contigNODE_6481_length_1166_cov_10.688372:466..1163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud930.t1Gcaud930.t1Gracilaria caudata M_176_S67 malemRNANODE_6481_length_1166_cov_10.688372 466..1163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud930.t1 ID=Gcaud930.t1|Name=Gcaud930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=122bp
MEIPHCYEKSMGYASLFLTIVNIISWTTLYQYLRASPDNIVRNPVAEEAP
LLPENDASEEEPDGASEAISRALKSKIFLSMLAAIVLAFIYPVANALLHH
DGMLRPNGGGAVRELSRISRR*
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