Gcaud180.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud180.t1
Unique Name	Gcaud180.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6013_length_1319_cov_43.127036	contig	NODE_6013_length_1319_cov_43.127036:301..1319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud180	Gcaud180	Gracilaria caudata M_176_S67 male	gene	NODE_6013_length_1319_cov_43.127036 301..1319 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud180.t1.start1	Gcaud180.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6013_length_1319_cov_43.127036 301..303 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud180.t1.CDS1	Gcaud180.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6013_length_1319_cov_43.127036 301..1319 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud180.t1.exon1	Gcaud180.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6013_length_1319_cov_43.127036 301..1319 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud180.t1	Gcaud180.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6013_length_1319_cov_43.127036 301..1319 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+
coding sequence from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+

mRNA sequence

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp
MSDSEKETETNSGIKIPRFHGKRGEDYALWRHRLRAACRIKGVWNVVNTD
AEQSMSTDTTVTDGRGSSAEAVRSLAKREKACGIIICALGDAPLRVVMDV
DDDPARMLKMLDARYASNRTVSRIAVQTQLFRMSYNGQNMSEYVDQFTAL
FSQLDRMGKDAAIPETHKAPMLLASIDPQSSLESTAAALRTKELSELTWD
YVATTLIDEYNARHITSGRSRSRKKNKGKGSGRQSGTSASANHRDGNDSD
DAPTARALAAGSTNGHHCDFCDRDGHTQDRCYMNPDNPDNHLPKSILDKL
AFKSKDKPKASSKSSGKSSKIEIAGMSMEKATVLPPTQRX

spliced messenger RNA

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1019bp|location=Sequence derived from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtctgactctgaaaaggaaactgaaaccaactctggtatcaagattcc
ccgcttccatggtaagcgtggtgaggattatgcactctggcggcatcgac
ttcgtgccgcatgtcgtatcaaaggtgtctggaatgttgttaacacggat
gctgaacagtctatgtcaactgataccactgttactgatggtcgaggatc
atccgcagaggccgtacgctcattggctaagcgcgaaaaggcctgtggca
tcatcatttgtgcacttggtgatgctccactacgtgtggtaatggacgtg
gatgacgatccggcgcgaatgctcaagatgctggatgcacgctatgcatc
caatcgaacagtttctcggatcgcggttcaaacccagctgttccgaatgt
cgtacaatggacagaacatgtctgagtatgtcgatcaatttactgcattg
ttctcacagttggatcgcatgggtaaggatgccgctattccagaaactca
taaggctcctatgcttttggcttctattgatccgcaaagttctctggagt
cgactgccgcggcattgcgcaccaaggaattatccgaactgacctgggac
tacgttgctaccacactcatcgatgagtacaatgcacgtcatataacgtc
cgggcgtagtcgcagtcgcaagaagaacaaaggaaaaggttccggaaggc
agtctggtacctctgcgagtgcaaaccatcgagatggaaatgactccgat
gatgctcctactgctcgtgcactggcggctggcagcaccaatggtcatca
ctgcgacttttgtgatcgtgatggacacacgcaggatcgatgctatatga
acccagacaatccggacaaccacttgccgaagagtattctggacaagttg
gcattcaagtccaaggataagcccaaggcatcctcaaaatcttcgggtaa
atcgtccaagatcgaaatagcgggcatgtctatggagaaagcaactgttc
taccacccacgcaaaggga

protein sequence of Gcaud180.t1

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MSDSEKETETNSGIKIPRFHGKRGEDYALWRHRLRAACRIKGVWNVVNTD
AEQSMSTDTTVTDGRGSSAEAVRSLAKREKACGIIICALGDAPLRVVMDV
DDDPARMLKMLDARYASNRTVSRIAVQTQLFRMSYNGQNMSEYVDQFTAL
FSQLDRMGKDAAIPETHKAPMLLASIDPQSSLESTAAALRTKELSELTWD
YVATTLIDEYNARHITSGRSRSRKKNKGKGSGRQSGTSASANHRDGNDSD
DAPTARALAAGSTNGHHCDFCDRDGHTQDRCYMNPDNPDNHLPKSILDKL
AFKSKDKPKASSKSSGKSSKIEIAGMSMEKATVLPPTQRX

mRNA from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1019bp|location=Sequence derived from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+ (Gracilaria caudata M_176_S67 male)
atgtctgactctgaaaaggaaactgaaaccaactctggtatcaagattcc
ccgcttccatggtaagcgtggtgaggattatgcactctggcggcatcgac
ttcgtgccgcatgtcgtatcaaaggtgtctggaatgttgttaacacggat
gctgaacagtctatgtcaactgataccactgttactgatggtcgaggatc
atccgcagaggccgtacgctcattggctaagcgcgaaaaggcctgtggca
tcatcatttgtgcacttggtgatgctccactacgtgtggtaatggacgtg
gatgacgatccggcgcgaatgctcaagatgctggatgcacgctatgcatc
caatcgaacagtttctcggatcgcggttcaaacccagctgttccgaatgt
cgtacaatggacagaacatgtctgagtatgtcgatcaatttactgcattg
ttctcacagttggatcgcatgggtaaggatgccgctattccagaaactca
taaggctcctatgcttttggcttctattgatccgcaaagttctctggagt
cgactgccgcggcattgcgcaccaaggaattatccgaactgacctgggac
tacgttgctaccacactcatcgatgagtacaatgcacgtcatataacgtc
cgggcgtagtcgcagtcgcaagaagaacaaaggaaaaggttccggaaggc
agtctggtacctctgcgagtgcaaaccatcgagatggaaatgactccgat
gatgctcctactgctcgtgcactggcggctggcagcaccaatggtcatca
ctgcgacttttgtgatcgtgatggacacacgcaggatcgatgctatatga
acccagacaatccggacaaccacttgccgaagagtattctggacaagttg
gcattcaagtccaaggataagcccaaggcatcctcaaaatcttcgggtaa
atcgtccaagatcgaaatagcgggcatgtctatggagaaagcaactgttc
taccacccacgcaaaggga

Coding sequence (CDS) from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1019bp|location=Sequence derived from alignment at NODE_6013_length_1319_cov_43.127036:301..1319+ (Gracilaria caudata M_176_S67 male)
atgtctgactctgaaaaggaaactgaaaccaactctggtatcaagattcc
ccgcttccatggtaagcgtggtgaggattatgcactctggcggcatcgac
ttcgtgccgcatgtcgtatcaaaggtgtctggaatgttgttaacacggat
gctgaacagtctatgtcaactgataccactgttactgatggtcgaggatc
atccgcagaggccgtacgctcattggctaagcgcgaaaaggcctgtggca
tcatcatttgtgcacttggtgatgctccactacgtgtggtaatggacgtg
gatgacgatccggcgcgaatgctcaagatgctggatgcacgctatgcatc
caatcgaacagtttctcggatcgcggttcaaacccagctgttccgaatgt
cgtacaatggacagaacatgtctgagtatgtcgatcaatttactgcattg
ttctcacagttggatcgcatgggtaaggatgccgctattccagaaactca
taaggctcctatgcttttggcttctattgatccgcaaagttctctggagt
cgactgccgcggcattgcgcaccaaggaattatccgaactgacctgggac
tacgttgctaccacactcatcgatgagtacaatgcacgtcatataacgtc
cgggcgtagtcgcagtcgcaagaagaacaaaggaaaaggttccggaaggc
agtctggtacctctgcgagtgcaaaccatcgagatggaaatgactccgat
gatgctcctactgctcgtgcactggcggctggcagcaccaatggtcatca
ctgcgacttttgtgatcgtgatggacacacgcaggatcgatgctatatga
acccagacaatccggacaaccacttgccgaagagtattctggacaagttg
gcattcaagtccaaggataagcccaaggcatcctcaaaatcttcgggtaa
atcgtccaagatcgaaatagcgggcatgtctatggagaaagcaactgttc
taccacccacgcaaaggga