Gcaud180.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud180.t1
Unique NameGcaud180.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length340
Homology
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BLAST of Gcaud180.t1 vs. uniprot
Match: UPI001C60CBBE (GAG-pre-integrase domain-containing protein n=1 Tax=Pseudomonas sp. MAG002Y TaxID=2678690 RepID=UPI001C60CBBE)

HSP 1 Score: 65.9 bits (159), Expect = 1.990e-8
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0 
Query:  266 HHCDFCDRDGHTQDRCYMNPDNPDNHLPKSILDKLAFKSKDKPKASSKSSGKSSKIEIAGMSMEKATVLPP 336
            H CDFC R GHT+DRCY NP NPDN LP  + +    K+     A ++   +  K EIAG  +EK T+ PP
Sbjct:   32 HQCDFCGRTGHTEDRCYQNPSNPDNKLPPKLREMFQDKA---AAAVAQDKTRPKKTEIAGSLVEKTTLSPP 99
The following BLAST results are available for this feature:
BLAST of Gcaud180.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C60CBBE1.990e-846.48GAG-pre-integrase domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 77..213
e-value: 1.5E-15
score: 57.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..340
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..313

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6013_length_1319_cov_43.127036contigNODE_6013_length_1319_cov_43.127036:301..1319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud180.t1Gcaud180.t1Gracilaria caudata M_176_S67 malemRNANODE_6013_length_1319_cov_43.127036 301..1319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud180.t1 ID=Gcaud180.t1|Name=Gcaud180.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MSDSEKETETNSGIKIPRFHGKRGEDYALWRHRLRAACRIKGVWNVVNTD
AEQSMSTDTTVTDGRGSSAEAVRSLAKREKACGIIICALGDAPLRVVMDV
DDDPARMLKMLDARYASNRTVSRIAVQTQLFRMSYNGQNMSEYVDQFTAL
FSQLDRMGKDAAIPETHKAPMLLASIDPQSSLESTAAALRTKELSELTWD
YVATTLIDEYNARHITSGRSRSRKKNKGKGSGRQSGTSASANHRDGNDSD
DAPTARALAAGSTNGHHCDFCDRDGHTQDRCYMNPDNPDNHLPKSILDKL
AFKSKDKPKASSKSSGKSSKIEIAGMSMEKATVLPPTQRX
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