Gcaud1460.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1460.t1
Unique Name	Gcaud1460.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	245

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:12809..13543 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	63402.XP_003176810.1
Preferred name	rmt3
PFAMs	Methyltransf_25,Methyltransf_31,PrmA
Max annot lvl	4751\|Fungi
KEGG rclass	RC00003,RC02120,RC03388,RC03390
KEGG ko	ko:K11436
KEGG Reaction	R11216,R11217,R11219
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008469,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0016273,GO:0016274,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019919,GO:0022613,GO:0031323,GO:0031326,GO:0032259,GO:0034969,GO:0035242,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0042254,GO:0043021,GO:0043022,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Evalue	2.51e-07
EggNOG OGs	COG0500@1\|root,KOG1499@2759\|Eukaryota,38BN9@33154\|Opisthokonta,3NV5S@4751\|Fungi,3QNQM@4890\|Ascomycota,20CMH@147545\|Eurotiomycetes,3B152@33183\|Onygenales,3FTXR@34384\|Arthrodermataceae
EC	2.1.1.319
Description	Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family
COG category	KOT
BRITE	ko00000,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1460	Gcaud1460	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 12809..13543 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1460.t1.start1	Gcaud1460.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 12809..12811 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1460.t1.CDS1	Gcaud1460.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 12809..13543 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1460.t1.exon1	Gcaud1460.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 12809..13543 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1460.t1.stop1	Gcaud1460.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 13541..13543 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1460.t1	Gcaud1460.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 12809..13543 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+

mRNA sequence

>Gcaud1460.t1 ID=Gcaud1460.t1|Name=Gcaud1460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=245bp
MVSPGPEKHSDEKVLLEGPVECKTLHSADDAARTVKEMVAMMKNMDPEVV
RRLVQARTAAESIQLAFPGGDQRFTDMDCDTDDVEDGEDYEEHEVPLTGS
SEKPFKEDPEEEEDVCYGLLDNSLYRSPQVCLTKTKEKYGFDIVSDMNAA
GLNLIERIRLVNYVRKLKNDNVPTDDIIRRSHAVLSERNEEILDNDSLLI
PVVEGDLLLTALETGDEFDNDFRREASAVRDAVEASLREEQILP*

spliced messenger RNA

>Gcaud1460.t1 ID=Gcaud1460.t1|Name=Gcaud1460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=735bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCCCCTGGGCCCGAAAAACACTCTGACGAAAAGGTATTGTTGGA
AGGACCAGTGGAGTGCAAAACTCTTCATTCTGCCGACGACGCTGCGAGAA
CAGTGAAGGAAATGGTAGCCATGATGAAGAATATGGACCCTGAGGTAGTG
AGAAGACTTGTTCAGGCGAGAACAGCTGCGGAAAGTATTCAATTAGCCTT
TCCGGGCGGCGACCAACGATTCACAGATATGGATTGTGATACGGATGATG
TAGAGGACGGTGAAGATTATGAAGAACATGAAGTTCCACTCACTGGATCT
TCTGAGAAACCGTTCAAAGAAGACCCTGAGGAAGAGGAAGATGTTTGCTA
TGGTTTACTGGATAATTCTTTGTATCGCAGCCCGCAAGTTTGTCTCACAA
AAACAAAAGAAAAATACGGATTTGATATCGTTTCTGATATGAATGCGGCT
GGTCTAAACCTCATTGAACGAATTCGGCTTGTGAATTATGTTAGAAAGCT
AAAGAACGACAATGTTCCAACTGATGATATCATCCGTCGTTCTCATGCAG
TGCTCTCTGAGCGAAATGAGGAAATCTTGGATAACGATTCACTCTTGATA
CCGGTTGTAGAGGGAGACTTGTTGCTTACCGCTTTAGAAACCGGAGACGA
GTTTGATAACGATTTTCGTCGGGAAGCTTCAGCAGTTCGAGATGCGGTGG
AGGCGTCTCTCCGAGAAGAGCAAATATTACCGTAG

protein sequence of Gcaud1460.t1

>Gcaud1460.t1 ID=Gcaud1460.t1|Name=Gcaud1460.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=245bp
MVSPGPEKHSDEKVLLEGPVECKTLHSADDAARTVKEMVAMMKNMDPEVV
RRLVQARTAAESIQLAFPGGDQRFTDMDCDTDDVEDGEDYEEHEVPLTGS
SEKPFKEDPEEEEDVCYGLLDNSLYRSPQVCLTKTKEKYGFDIVSDMNAA
GLNLIERIRLVNYVRKLKNDNVPTDDIIRRSHAVLSERNEEILDNDSLLI
PVVEGDLLLTALETGDEFDNDFRREASAVRDAVEASLREEQILP*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1460.t1 ID=Gcaud1460.t1|Name=Gcaud1460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=735bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+ (Gracilaria caudata M_176_S67 male)
ATGGTATCCCCTGGGCCCGAAAAACACTCTGACGAAAAGGTATTGTTGGA
AGGACCAGTGGAGTGCAAAACTCTTCATTCTGCCGACGACGCTGCGAGAA
CAGTGAAGGAAATGGTAGCCATGATGAAGAATATGGACCCTGAGGTAGTG
AGAAGACTTGTTCAGGCGAGAACAGCTGCGGAAAGTATTCAATTAGCCTT
TCCGGGCGGCGACCAACGATTCACAGATATGGATTGTGATACGGATGATG
TAGAGGACGGTGAAGATTATGAAGAACATGAAGTTCCACTCACTGGATCT
TCTGAGAAACCGTTCAAAGAAGACCCTGAGGAAGAGGAAGATGTTTGCTA
TGGTTTACTGGATAATTCTTTGTATCGCAGCCCGCAAGTTTGTCTCACAA
AAACAAAAGAAAAATACGGATTTGATATCGTTTCTGATATGAATGCGGCT
GGTCTAAACCTCATTGAACGAATTCGGCTTGTGAATTATGTTAGAAAGCT
AAAGAACGACAATGTTCCAACTGATGATATCATCCGTCGTTCTCATGCAG
TGCTCTCTGAGCGAAATGAGGAAATCTTGGATAACGATTCACTCTTGATA
CCGGTTGTAGAGGGAGACTTGTTGCTTACCGCTTTAGAAACCGGAGACGA
GTTTGATAACGATTTTCGTCGGGAAGCTTCAGCAGTTCGAGATGCGGTGG
AGGCGTCTCTCCGAGAAGAGCAAATATTACCGTAG

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+

>Gcaud1460.t1 ID=Gcaud1460.t1|Name=Gcaud1460.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=735bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:12809..13543+ (Gracilaria caudata M_176_S67 male)
ATGGTATCCCCTGGGCCCGAAAAACACTCTGACGAAAAGGTATTGTTGGA
AGGACCAGTGGAGTGCAAAACTCTTCATTCTGCCGACGACGCTGCGAGAA
CAGTGAAGGAAATGGTAGCCATGATGAAGAATATGGACCCTGAGGTAGTG
AGAAGACTTGTTCAGGCGAGAACAGCTGCGGAAAGTATTCAATTAGCCTT
TCCGGGCGGCGACCAACGATTCACAGATATGGATTGTGATACGGATGATG
TAGAGGACGGTGAAGATTATGAAGAACATGAAGTTCCACTCACTGGATCT
TCTGAGAAACCGTTCAAAGAAGACCCTGAGGAAGAGGAAGATGTTTGCTA
TGGTTTACTGGATAATTCTTTGTATCGCAGCCCGCAAGTTTGTCTCACAA
AAACAAAAGAAAAATACGGATTTGATATCGTTTCTGATATGAATGCGGCT
GGTCTAAACCTCATTGAACGAATTCGGCTTGTGAATTATGTTAGAAAGCT
AAAGAACGACAATGTTCCAACTGATGATATCATCCGTCGTTCTCATGCAG
TGCTCTCTGAGCGAAATGAGGAAATCTTGGATAACGATTCACTCTTGATA
CCGGTTGTAGAGGGAGACTTGTTGCTTACCGCTTTAGAAACCGGAGACGA
GTTTGATAACGATTTTCGTCGGGAAGCTTCAGCAGTTCGAGATGCGGTGG
AGGCGTCTCTCCGAGAAGAGCAAATATTACCGTAG