Gcaud8303.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8303.t1
Unique NameGcaud8303.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5600_length_1505_cov_4.568600contigNODE_5600_length_1505_cov_4.568600:766..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8303Gcaud8303Gracilaria caudata M_176_S67 malegeneNODE_5600_length_1505_cov_4.568600 766..1395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1.stop1Gcaud8303.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5600_length_1505_cov_4.568600 766..768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1.CDS1Gcaud8303.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5600_length_1505_cov_4.568600 766..1395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1.exon1Gcaud8303.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5600_length_1505_cov_4.568600 766..1395 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1.start1Gcaud8303.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5600_length_1505_cov_4.568600 1393..1395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1Gcaud8303.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5600_length_1505_cov_4.568600 766..1395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MSIRHVKFREALPFVCLLPIIFAATHASQYPTEKNQNSGRAWVLPDSCSR
ETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALV
SMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQV
HMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDR
IIAAFSSPG*
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spliced messenger RNA

>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:766..1395- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATTCGTCACGTTAAATTCAGAGAGGCTTTGCCTTTCGTTTGCCT
TCTTCCCATCATCTTCGCCGCGACCCATGCATCTCAATATCCAACGGAAA
AGAACCAGAATTCAGGTCGTGCTTGGGTCTTACCGGATTCTTGCTCAAGG
GAAACTACGTTGCGTAACAACCTTGAAGAGGCCAAAGACTGCATTACTAG
TTTGAGCACAACTGGTGCCTCCATTGAACATCTGGTCGAACGTGCTGGCG
ATATCACTCTCAAGGAAGCAATCGATTTGGAACTTATTCCGGCGCTCGTC
TCCATGAACCGCGACTACTGGAAAGGATTCCCGCTTCTTTTCGATGCCGC
TACTTGTGCCACCGAACGATTGAACGCCAACACCAAGGACGAAGGTGCTC
AAGCTCTTGATGGTCAAGTTTCTACACTATTCACAAACTTCATTCAGGTT
CACATGCCCGCCGCCATCATTCTCAAACTTTGCAAAGAGGAAGTATTTGA
ACAGTTCCTTCAAAGTGACGCCGTTGCAAGAGAAGCCGAGTTCTTCCTCC
GGGAGACTCGCAAGTTGAAACCTTACTCACTCCGTTTACCCGAGGACAGA
ATCATCGCTGCTTTTTCGAGCCCCGGATAA
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protein sequence of Gcaud8303.t1

>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MSIRHVKFREALPFVCLLPIIFAATHASQYPTEKNQNSGRAWVLPDSCSR
ETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALV
SMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQV
HMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDR
IIAAFSSPG*
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mRNA from alignment at NODE_5600_length_1505_cov_4.568600:766..1395-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:766..1395- (Gracilaria caudata M_176_S67 male)
ATGTCTATTCGTCACGTTAAATTCAGAGAGGCTTTGCCTTTCGTTTGCCT
TCTTCCCATCATCTTCGCCGCGACCCATGCATCTCAATATCCAACGGAAA
AGAACCAGAATTCAGGTCGTGCTTGGGTCTTACCGGATTCTTGCTCAAGG
GAAACTACGTTGCGTAACAACCTTGAAGAGGCCAAAGACTGCATTACTAG
TTTGAGCACAACTGGTGCCTCCATTGAACATCTGGTCGAACGTGCTGGCG
ATATCACTCTCAAGGAAGCAATCGATTTGGAACTTATTCCGGCGCTCGTC
TCCATGAACCGCGACTACTGGAAAGGATTCCCGCTTCTTTTCGATGCCGC
TACTTGTGCCACCGAACGATTGAACGCCAACACCAAGGACGAAGGTGCTC
AAGCTCTTGATGGTCAAGTTTCTACACTATTCACAAACTTCATTCAGGTT
CACATGCCCGCCGCCATCATTCTCAAACTTTGCAAAGAGGAAGTATTTGA
ACAGTTCCTTCAAAGTGACGCCGTTGCAAGAGAAGCCGAGTTCTTCCTCC
GGGAGACTCGCAAGTTGAAACCTTACTCACTCCGTTTACCCGAGGACAGA
ATCATCGCTGCTTTTTCGAGCCCCGGATAA
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Coding sequence (CDS) from alignment at NODE_5600_length_1505_cov_4.568600:766..1395-

>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_5600_length_1505_cov_4.568600:766..1395- (Gracilaria caudata M_176_S67 male)
ATGTCTATTCGTCACGTTAAATTCAGAGAGGCTTTGCCTTTCGTTTGCCT
TCTTCCCATCATCTTCGCCGCGACCCATGCATCTCAATATCCAACGGAAA
AGAACCAGAATTCAGGTCGTGCTTGGGTCTTACCGGATTCTTGCTCAAGG
GAAACTACGTTGCGTAACAACCTTGAAGAGGCCAAAGACTGCATTACTAG
TTTGAGCACAACTGGTGCCTCCATTGAACATCTGGTCGAACGTGCTGGCG
ATATCACTCTCAAGGAAGCAATCGATTTGGAACTTATTCCGGCGCTCGTC
TCCATGAACCGCGACTACTGGAAAGGATTCCCGCTTCTTTTCGATGCCGC
TACTTGTGCCACCGAACGATTGAACGCCAACACCAAGGACGAAGGTGCTC
AAGCTCTTGATGGTCAAGTTTCTACACTATTCACAAACTTCATTCAGGTT
CACATGCCCGCCGCCATCATTCTCAAACTTTGCAAAGAGGAAGTATTTGA
ACAGTTCCTTCAAAGTGACGCCGTTGCAAGAGAAGCCGAGTTCTTCCTCC
GGGAGACTCGCAAGTTGAAACCTTACTCACTCCGTTTACCCGAGGACAGA
ATCATCGCTGCTTTTTCGAGCCCCGGATAA
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