Gcaud8303.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8303.t1
Unique NameGcaud8303.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Homology
BLAST of Gcaud8303.t1 vs. uniprot
Match: A0A2V3IQS2_9FLOR (Group B oligopeptidase PepB n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQS2_9FLOR)

HSP 1 Score: 228 bits (582), Expect = 8.610e-68
Identity = 113/209 (54.07%), Postives = 148/209 (70.81%), Query Frame = 0
Query:    1 MSIRHVKFREALPFVCLLPIIFAATHASQYPTEKNQNSGRAWVLPDSCSRETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALVSMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQVHMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDRIIAAFSSPG 209
            M++ +V+ + AL  VC LP+ FA THAS  P+ KNQ  G +WVLP S + + +L +NL+EAK+C   ++ T + I HLV++A DITL EA +  LIPALVSMN++YWKGF LLFDA    +ERLN +  D  AQ   G+V+ +   F+Q H+PAAIILKLCK+EVFE+FL SD  A+EAEFFLRE RKLKP++L   E+ II   S PG
Sbjct:    1 MAMFYVQSKAALLIVCTLPVFFAFTHASLDPSPKNQYQGPSWVLPYSSTEDPSLLSNLDEAKECGKLMNETASEIRHLVDKASDITLAEAHEERLIPALVSMNKNYWKGFALLFDAGVYVSERLNVDGTDRDAQVFGGKVNNILIPFLQAHLPAAIILKLCKDEVFEEFLNSDESAKEAEFFLREARKLKPHALSFAEENIITGLSDPG 209          
BLAST of Gcaud8303.t1 vs. uniprot
Match: A0A2V3IH89_9FLOR (Oligoendopeptidase F-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH89_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 2.860e-23
Identity = 58/178 (32.58%), Postives = 99/178 (55.62%), Query Frame = 0
Query:   32 TEKNQNSGRAWVLPDSCSRETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALVSMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQVHMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDRIIAAFSSPG 209
            +E +  +G  W L  + + ++ L  ++EE    I  ++     I+H V  A  ITL++A   +LIP L  M+R+YW    LL +  T A+   + +  DE A+ + G++   F+   Q   PA +IL LC ++VF+ FL +D +A++AE+ LR +RK+K + L L E+ +I +    G
Sbjct:   11 SEADGITGPTWELEYAATDDSLLNADIEEGGRLIALINEAAEEIKHFVPEARTITLEQAGKGDLIPTLAEMHRNYWDTAVLLRNVYTYASCVSSVDGSDESAKKISGKMQVAFSRLQQAFEPAQLILDLCPDDVFDTFLAADKLAKDAEYSLRHSRKMKEHRLTLAEENMITSLKVTG 188          
BLAST of Gcaud8303.t1 vs. uniprot
Match: R7QLG6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLG6_CHOCR)

HSP 1 Score: 87.4 bits (215), Expect = 2.090e-16
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 0
Query:   38 SGRAWVLPDSCSRETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALVSMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQVHMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDRIIAAFSSPG 209
            SG  W L  +   + TL ++L  AK  +  +  TG+++  LV  A ++T  +    ++   L++M R YW    LL + +T A+   + +  +  A+ L GQ+  LF      + PAA+IL LC + +F  FL ++   R AEF L  +RK+  + L L E+ ++   S  G
Sbjct:  445 SGPTWQLEYTALDDRTLLDDLAIAKRDMDEMERTGSTLADLVPLARELTDDQITQHDIRAKLLAMFRSYWNAVVLLRNVSTYASCVASVDGTNAEAKKLAGQIQVLFARARTAYEPAALILDLCPDALFNDFLAANEETRAAEFLLSHSRKMARHRLSLQEENMVTKLSVTG 616          
The following BLAST results are available for this feature:
BLAST of Gcaud8303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IQS2_9FLOR8.610e-6854.07Group B oligopeptidase PepB n=2 Tax=Gracilariopsis... [more]
A0A2V3IH89_9FLOR2.860e-2332.58Oligoendopeptidase F-like n=1 Tax=Gracilariopsis c... [more]
R7QLG6_CHOCR2.090e-1630.23Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.70coord: 112..209
e-value: 5.5E-10
score: 41.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
IPR013647Oligopeptidase F, N-terminal domainPFAMPF08439Peptidase_M3_Ncoord: 162..209
e-value: 7.2E-6
score: 26.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5600_length_1505_cov_4.568600contigNODE_5600_length_1505_cov_4.568600:766..1395 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8303.t1Gcaud8303.t1Gracilaria caudata M_176_S67 malemRNANODE_5600_length_1505_cov_4.568600 766..1395 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8303.t1 ID=Gcaud8303.t1|Name=Gcaud8303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MSIRHVKFREALPFVCLLPIIFAATHASQYPTEKNQNSGRAWVLPDSCSR
ETTLRNNLEEAKDCITSLSTTGASIEHLVERAGDITLKEAIDLELIPALV
SMNRDYWKGFPLLFDAATCATERLNANTKDEGAQALDGQVSTLFTNFIQV
HMPAAIILKLCKEEVFEQFLQSDAVAREAEFFLRETRKLKPYSLRLPEDR
IIAAFSSPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013647OligopepF_N_dom