Gcaud1636.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1636.t1
Unique NameGcaud1636.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length233
Homology
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A2V3IGQ1_9FLOR (Nuclear transcription factor Y subunit C-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGQ1_9FLOR)

HSP 1 Score: 380 bits (977), Expect = 2.610e-131
Identity = 199/234 (85.04%), Postives = 210/234 (89.74%), Query Frame = 0
Query:    1 MQHQTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAVDPAQLQ--YYSVPNMQPPPYPIPAQIAGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQYMRMPQQVVYAPPGYQPGYIAGGTAAQEQPPQS 232
            MQHQTRQAQLQQQQSL ELN+KLAHFW+EQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDR  +GAVD AQ+   Y ++PN+  P Y IP QI GA D+S AMIY P+APQ Y S GYAAG+PYQ GIV+PQYMRMPQQVVYAPPGYQPGYIAG T  QEQPPQS
Sbjct:   62 MQHQTRQAQLQQQQSLHELNSKLAHFWNEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRPASGAVDAAQIPPYYANMPNIPSPAYTIPPQIPGATDSSAAMIYQPSAPQGYVSAGYAAGIPYQPGIVSPQYMRMPQQVVYAPPGYQPGYIAGSTGTQEQPPQS 295          
BLAST of Gcaud1636.t1 vs. uniprot
Match: R7QN00_CHOCR (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN00_CHOCR)

HSP 1 Score: 317 bits (813), Expect = 1.230e-105
Identity = 180/236 (76.27%), Postives = 194/236 (82.20%), Query Frame = 0
Query:    1 MQHQTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDD-RAGAGAVDPAQLQYYSVPNMQPPPYPIPAQI-AGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQYMRMPQQVVYAPPG-YQPGYIAGGTAA-QEQPPQS 232
            MQ QTRQAQLQQQ +LQEL AKL+ FW EQM+EVQ ATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDD R   GAVD  Q+ YY++ NM  P Y +P Q+   A DTS AM+Y  NA  VYAS GYA  + YQ G+VNPQYMRM Q V+YA PG Y   Y+AGGTA  Q+QPPQS
Sbjct:  113 MQQQTRQAQLQQQHNLQELTAKLSQFWLEQMTEVQQATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDVRPVTGAVDQTQMPYYTMANM--PAYGMPPQVNPAATDTSAAMMYSHNAQGVYASAGYANNIAYQPGMVNPQYMRMQQPVMYATPGAYGAQYLAGGTAQDQQQPPQS 346          
BLAST of Gcaud1636.t1 vs. uniprot
Match: M2XUB9_GALSU (Nuclear transcription factor Y, gamma n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XUB9_GALSU)

HSP 1 Score: 197 bits (501), Expect = 9.720e-60
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0
Query:    4 QTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAV-----DPAQLQY 143
            Q RQ QLQQQ+SLQ LNA LA FW EQM EV   TDFKNH+LPLARIKKIMKSDEDVRMISAEAP LF+KACEMFILELT RAWAQTEE+KRRTLQR DI++AIQKTDIFDFLIDIVPR+DPK     G  ++     +PA L Y
Sbjct:   34 QFRQQQLQQQRSLQALNATLAQFWDEQMREVSVITDFKNHMLPLARIKKIMKSDEDVRMISAEAPALFSKACEMFILELTIRAWAQTEESKRRTLQRCDIASAIQKTDIFDFLIDIVPREDPKMPQEHGGLSITSSTDNPALLSY 178          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A1X6NZD9_PORUM (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZD9_PORUM)

HSP 1 Score: 199 bits (507), Expect = 3.540e-59
Identity = 113/154 (73.38%), Postives = 122/154 (79.22%), Query Frame = 0
Query:   13 QQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRA------GA---GAVDPAQLQ---YYSVPNMQPPPY 154
            QQ  Q L+A+L  FW+EQ +EV+ ATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELT RAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRD+PKK+  A      GA   G + P       YY +PN   PPY
Sbjct:   83 QQGAQVLDAQLTTFWTEQQTEVEQATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTLRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDEPKKEVGAPVAGFPGAVPGGVMPPGGTPVGGYYGMPNAGMPPY 236          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A5J4YT50_PORPP (Nuclear transcription factor Y subunit C-9 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT50_PORPP)

HSP 1 Score: 180 bits (457), Expect = 8.730e-53
Identity = 104/159 (65.41%), Postives = 116/159 (72.96%), Query Frame = 0
Query:    9 QLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDP----KKDDRA-----GAGAVDPAQLQYYSVPNMQPPPYPIPA 158
            QL  QQS+Q L  +L  FW +Q  E    TD KNH LPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFI+ELT RAWAQTEEAKRRTLQRSDI+ AIQKTDIFDFLIDIVPR+D     KK++ A      AG  +   +QYYS+      P  +PA
Sbjct:   25 QLHMQQSMQNLEIELKKFWDQQRDEAALVTDVKNHTLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFIVELTLRAWAQTEEAKRRTLQRSDIALAIQKTDIFDFLIDIVPREDAAGTVKKEESARLSTGAAGDANAHNVQYYSMQQHAGMPSHMPA 183          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A7S0G4M5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4M5_9RHOD)

HSP 1 Score: 176 bits (446), Expect = 4.510e-52
Identity = 101/164 (61.59%), Postives = 117/164 (71.34%), Query Frame = 0
Query:    9 QLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDD-RAGAGAVDPAQLQYYSVPNMQPP-PYPIPAQIAGAGDTSGAM 170
            Q+ QQQS   +  +L  FW  Q  EV    DFK   LPLARIKKIMKSDEDV+MISAEAPVLFAKACEMFI ELT R+WAQTE+AKRRTLQRSD+S AIQKTDIFDFLIDIVPR++PK+D+       VD A + YY + N  P  PY +P  +   G  +G M
Sbjct:   29 QMHQQQSGGGVMDQLQEFWGRQRQEVAKTADFKVQQLPLARIKKIMKSDEDVKMISAEAPVLFAKACEMFIQELTIRSWAQTEDAKRRTLQRSDVSGAIQKTDIFDFLIDIVPRNEPKEDEAHRPVTNVDGAPMPYYQMGNQVPTVPYVMPQPMMPQGQAAGQM 192          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A090N4A5_OSTTA (Transcriptional activator NFYC/HAP5 subunit n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4A5_OSTTA)

HSP 1 Score: 176 bits (446), Expect = 1.970e-51
Identity = 101/162 (62.35%), Postives = 113/162 (69.75%), Query Frame = 0
Query:   21 AKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAVDPAQLQYYSVPNMQP----PPYPIPAQIAGAGDTSG----AMIYPP 174
            AKL  FW EQM E+QA  DFKNHLLPLARIKKIMKSDEDVRMIS+EAPVLFAKACEMF+LELT RAWA  +E KRRTLQR DI+AAI KTDIFDFLIDIVPRD+      AG G  D  + +  S P +      PP  + + I G   TS     A  +PP
Sbjct:   72 AKLREFWREQMMEIQATHDFKNHLLPLARIKKIMKSDEDVRMISSEAPVLFAKACEMFVLELTMRAWAHAQENKRRTLQRGDIAAAITKTDIFDFLIDIVPRDE------AGEGGGDDGENEGPSAPQLGALPIFPPQQLVSSIPGVPGTSARPGYAFDFPP 227          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A251TTQ9_HELAN (Putative nuclear factor Y, subunit C9 n=3 Tax=Asteraceae TaxID=4210 RepID=A0A251TTQ9_HELAN)

HSP 1 Score: 176 bits (445), Expect = 3.420e-51
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 0
Query:   13 QQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKD------DRAGAGAVDPAQLQYYSVPNMQPPPYPIPAQIAGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQYMRMPQ 205
            QQ  Q+L+ +L +FW+ Q  E++  TDFKNH LPLARIKKIMK+DEDVRMISAEAPV+FA+ACEMFILELT R+W  TEE KRRTLQ++DI+AAI +TDIFDFL+DIVPR+D K +       R G        L YY +P   PPP     Q+ G+G   G     P  PQ +  G   +   Y A  + PQ  + PQ
Sbjct:   66 QQQQQQLHQQLQNFWANQYQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASTIPRGGPVGAPTEGLPYYYMPPAHPPP-----QVGGSGMYMGK----PVDPQAHLYGQQTSA--YMAQPLWPQQQQDPQ 253          
BLAST of Gcaud1636.t1 vs. uniprot
Match: K7V395_MAIZE (CCAAT-HAP5 transcription factor n=3 Tax=Zea mays TaxID=4577 RepID=K7V395_MAIZE)

HSP 1 Score: 172 bits (435), Expect = 2.200e-50
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = 0
Query:   21 AKLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAG-------------AVDPAQLQYYSV 146
            A+L  FW+EQ  E++A TDFKNH LPLARIKKIMK+DEDVRMI+AEAPV+FA+ACEMFILELTHR WA  EE KRRTLQ+SDI+AA+ +T++FDFL+DIVPRD+P+  D A A              A DP  + YY V
Sbjct:   61 AQLQLFWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEVFDFLVDIVPRDEPRDADPAAAAMGAAAPGIPQHPAAADPTTMGYYYV 199          
BLAST of Gcaud1636.t1 vs. uniprot
Match: A0A0P0XN89_ORYSJ (Os09g0480700 protein (Fragment) n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0XN89_ORYSJ)

HSP 1 Score: 170 bits (431), Expect = 3.080e-50
Identity = 90/141 (63.83%), Postives = 104/141 (73.76%), Query Frame = 0
Query:   22 KLAHFWSEQMSEVQAATDFKNHLLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQRSDISAAIQKTDIFDFLIDIVPRDDPKKDDRA-------------GAGAVDPAQLQYYSVPNM 149
            +L  FW+EQ  E++A TDFKNH LPLARIKKIMK+DEDVRMI+AEAPV+FA+ACEMFILELTHR WA  EE KRRTLQ+SDI+AAI +T++FDFL+DIVPRDD K  D A             G  A DP  L YY VP  
Sbjct:   30 QLQMFWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDAKDADAAAXXXXAGIPRPAAGVPATDP--LAYYYVPQQ 168          
The following BLAST results are available for this feature:
BLAST of Gcaud1636.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGQ1_9FLOR2.610e-13185.04Nuclear transcription factor Y subunit C-2 n=1 Tax... [more]
R7QN00_CHOCR1.230e-10576.27CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ch... [more]
M2XUB9_GALSU9.720e-6074.48Nuclear transcription factor Y, gamma n=1 Tax=Gald... [more]
A0A1X6NZD9_PORUM3.540e-5973.38CBFD_NFYB_HMF domain-containing protein n=1 Tax=Po... [more]
A0A5J4YT50_PORPP8.730e-5365.41Nuclear transcription factor Y subunit C-9 n=1 Tax... [more]
A0A7S0G4M5_9RHOD4.510e-5261.59Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A090N4A5_OSTTA1.970e-5162.35Transcriptional activator NFYC/HAP5 subunit n=1 Ta... [more]
A0A251TTQ9_HELAN3.420e-5152.26Putative nuclear factor Y, subunit C9 n=3 Tax=Aste... [more]
K7V395_MAIZE2.200e-5062.59CCAAT-HAP5 transcription factor n=3 Tax=Zea mays T... [more]
A0A0P0XN89_ORYSJ3.080e-5063.83Os09g0480700 protein (Fragment) n=2 Tax=Oryza sati... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 45..107
e-value: 4.2E-20
score: 71.8
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 5..122
e-value: 4.3E-45
score: 154.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 22..116
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 5..174
IPR027170Transcriptional activator HAP5 subunitPANTHERPTHR10252:SF8NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMAcoord: 5..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_496_length_23667_cov_4.408424contigNODE_496_length_23667_cov_4.408424:22758..23456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1Gcaud1636.t1Gracilaria caudata M_176_S67 malemRNANODE_496_length_23667_cov_4.408424 22758..23456 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
MQHQTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARI
KKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQR
SDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAVDPAQLQYYSVPNMQ
PPPYPIPAQIAGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQY
MRMPQQVVYAPPGYQPGYIAGGTAAQEQPPQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
IPR027170HAP5_su