Gcaud1636.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1636.t1
Unique NameGcaud1636.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_496_length_23667_cov_4.408424contigNODE_496_length_23667_cov_4.408424:22758..23456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703768.1
Preferred nameNFYC
PFAMsCBFD_NFYB_HMF,Histone
Max annot lvl2759|Eukaryota
KEGG koko:K08066,ko:K19681
KEGG Pathwayko04612,ko05152,map04612,map05152
GOsGO:0000429,GO:0000436,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006457,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016602,GO:0018130,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0040011,GO:0042221,GO:0042330,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043457,GO:0043467,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045540,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046483,GO:0046890,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0061564,GO:0062012,GO:0065007,GO:0070013,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090181,GO:0090304,GO:0090575,GO:0097159,GO:0097485,GO:0097659,GO:0106118,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue2.39e-60
EggNOG OGsCOG5208@1|root,KOG1657@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryK
BRITEko00000,ko00001,ko03000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1636Gcaud1636Gracilaria caudata M_176_S67 malegeneNODE_496_length_23667_cov_4.408424 22758..23456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1.stop1Gcaud1636.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_496_length_23667_cov_4.408424 22758..22760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1.CDS1Gcaud1636.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_496_length_23667_cov_4.408424 22758..23456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1.exon1Gcaud1636.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_496_length_23667_cov_4.408424 22758..23456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1.start1Gcaud1636.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_496_length_23667_cov_4.408424 23454..23456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1636.t1Gcaud1636.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_496_length_23667_cov_4.408424 22758..23456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=233bp
MQHQTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARI
KKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQR
SDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAVDPAQLQYYSVPNMQ
PPPYPIPAQIAGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQY
MRMPQQVVYAPPGYQPGYIAGGTAAQEQPPQS*
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spliced messenger RNA

>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:22758..23456- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACCAGACGCGCCAGGCGCAGCTGCAGCAGCAGCAGAGCCTGCA
GGAGCTCAACGCGAAGCTGGCGCACTTCTGGAGCGAGCAGATGAGCGAGG
TGCAGGCCGCAACCGACTTCAAGAACCACCTGCTGCCGCTGGCGCGCATC
AAGAAGATCATGAAGTCCGACGAGGACGTGCGCATGATCTCTGCCGAGGC
GCCTGTGCTGTTTGCAAAGGCGTGCGAGATGTTCATTCTGGAACTCACGC
ATCGCGCGTGGGCGCAGACGGAGGAGGCGAAGCGACGCACGTTGCAACGC
TCCGATATCTCTGCCGCCATACAGAAGACCGATATCTTCGACTTTCTCAT
CGACATTGTGCCGCGGGACGACCCCAAGAAGGACGATCGCGCGGGCGCTG
GAGCCGTTGATCCGGCGCAGTTGCAGTACTACTCGGTGCCTAACATGCAG
CCGCCGCCGTACCCGATTCCGGCGCAGATTGCGGGCGCGGGCGATACTTC
GGGCGCCATGATCTATCCGCCTAATGCGCCGCAGGTTTATGCGTCTGGCG
GATATGCCGCGGGCGTGCCGTATCAAGCGGGCATTGTTAACCCGCAGTAC
ATGCGCATGCCGCAACAGGTTGTGTACGCGCCGCCTGGATACCAGCCCGG
ATATATTGCGGGCGGCACTGCTGCTCAGGAACAACCACCGCAATCGTAG
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protein sequence of Gcaud1636.t1

>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
MQHQTRQAQLQQQQSLQELNAKLAHFWSEQMSEVQAATDFKNHLLPLARI
KKIMKSDEDVRMISAEAPVLFAKACEMFILELTHRAWAQTEEAKRRTLQR
SDISAAIQKTDIFDFLIDIVPRDDPKKDDRAGAGAVDPAQLQYYSVPNMQ
PPPYPIPAQIAGAGDTSGAMIYPPNAPQVYASGGYAAGVPYQAGIVNPQY
MRMPQQVVYAPPGYQPGYIAGGTAAQEQPPQS*
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mRNA from alignment at NODE_496_length_23667_cov_4.408424:22758..23456-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:22758..23456- (Gracilaria caudata M_176_S67 male)
ATGCAGCACCAGACGCGCCAGGCGCAGCTGCAGCAGCAGCAGAGCCTGCA
GGAGCTCAACGCGAAGCTGGCGCACTTCTGGAGCGAGCAGATGAGCGAGG
TGCAGGCCGCAACCGACTTCAAGAACCACCTGCTGCCGCTGGCGCGCATC
AAGAAGATCATGAAGTCCGACGAGGACGTGCGCATGATCTCTGCCGAGGC
GCCTGTGCTGTTTGCAAAGGCGTGCGAGATGTTCATTCTGGAACTCACGC
ATCGCGCGTGGGCGCAGACGGAGGAGGCGAAGCGACGCACGTTGCAACGC
TCCGATATCTCTGCCGCCATACAGAAGACCGATATCTTCGACTTTCTCAT
CGACATTGTGCCGCGGGACGACCCCAAGAAGGACGATCGCGCGGGCGCTG
GAGCCGTTGATCCGGCGCAGTTGCAGTACTACTCGGTGCCTAACATGCAG
CCGCCGCCGTACCCGATTCCGGCGCAGATTGCGGGCGCGGGCGATACTTC
GGGCGCCATGATCTATCCGCCTAATGCGCCGCAGGTTTATGCGTCTGGCG
GATATGCCGCGGGCGTGCCGTATCAAGCGGGCATTGTTAACCCGCAGTAC
ATGCGCATGCCGCAACAGGTTGTGTACGCGCCGCCTGGATACCAGCCCGG
ATATATTGCGGGCGGCACTGCTGCTCAGGAACAACCACCGCAATCGTAG
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Coding sequence (CDS) from alignment at NODE_496_length_23667_cov_4.408424:22758..23456-

>Gcaud1636.t1 ID=Gcaud1636.t1|Name=Gcaud1636.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=699bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:22758..23456- (Gracilaria caudata M_176_S67 male)
ATGCAGCACCAGACGCGCCAGGCGCAGCTGCAGCAGCAGCAGAGCCTGCA
GGAGCTCAACGCGAAGCTGGCGCACTTCTGGAGCGAGCAGATGAGCGAGG
TGCAGGCCGCAACCGACTTCAAGAACCACCTGCTGCCGCTGGCGCGCATC
AAGAAGATCATGAAGTCCGACGAGGACGTGCGCATGATCTCTGCCGAGGC
GCCTGTGCTGTTTGCAAAGGCGTGCGAGATGTTCATTCTGGAACTCACGC
ATCGCGCGTGGGCGCAGACGGAGGAGGCGAAGCGACGCACGTTGCAACGC
TCCGATATCTCTGCCGCCATACAGAAGACCGATATCTTCGACTTTCTCAT
CGACATTGTGCCGCGGGACGACCCCAAGAAGGACGATCGCGCGGGCGCTG
GAGCCGTTGATCCGGCGCAGTTGCAGTACTACTCGGTGCCTAACATGCAG
CCGCCGCCGTACCCGATTCCGGCGCAGATTGCGGGCGCGGGCGATACTTC
GGGCGCCATGATCTATCCGCCTAATGCGCCGCAGGTTTATGCGTCTGGCG
GATATGCCGCGGGCGTGCCGTATCAAGCGGGCATTGTTAACCCGCAGTAC
ATGCGCATGCCGCAACAGGTTGTGTACGCGCCGCCTGGATACCAGCCCGG
ATATATTGCGGGCGGCACTGCTGCTCAGGAACAACCACCGCAATCGTAG
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