Gcaud1679.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1679.t1
Unique Name	Gcaud1679.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	546

Homology

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BLAST of Gcaud1679.t1 vs. uniprot
Match: A0A2V3IXK9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXK9_9FLOR)

HSP 1 Score: 734 bits (1894), Expect = 1.350e-261
Identity = 369/546 (67.58%), Postives = 436/546 (79.85%), Query Frame = 0

Query:    1 MRAFSMALVCDGVVIVTHRRNELSVSNWFPPDSVQAVLCHRNLPEGESALLLRAHPNLAEQD-SVSGVQTALLNDFLSRRCIAALRCLCKADFVSAENEHFVHDRYYLNKIKAWSAAGHATVLECHTGVEYFSLFRPGVCVLISVGVYAATDRPCTTFFDFVYAGAPLQYTCGHDMLGLADAEGQDVLRNMLRDVVSLLGGPSMALIYAVSSNSIAGFRYVKVELCRAEYSRRGTLGDLSWICRSVAAYEAVPIADENVVAEAMRAVHHEDLANDVEQLLRGNDVPVRLLLKYDVASAVRAIPHRRAMNRLRYAALLSRRTMLVPTAANARYDKVRATSAIHAIDAEGRVVGRKWLALALIVVASACGAAVAAYCISRDENVNSAEIIGTALAVGTVLLITLPQLHVETIGAGYTIGDLYRGCMPMTVVMQRRDVAFLKECVRKGANVEGVISGRHGCFLLGRARGNLDIGPVKVRDLDDRWDYGVSDRGVLCLRYRGLVGDMQVRERKIDGKMCRWWHCAVVGSKIVKGVGKAEVLEYLGDGEIG 545
            MR F +AL+  GVVIVT R+ E ++S WF  D+V A    R++P GE ALLLRA+P++ E D +V G      +    RR IA LR LC ADFVSAENE FV   YYL K++AW A+GHATVLE HTGVEYF+LFR G CVL+SVGVY ATDRPCT FF FV+AG+ LQ+TCGHDMLG+AD EGQ  LR ML +VV +LGGPSMALIYAVSS+ +A FR+ KVELCRA +S  G LGDLSW+ R   AY+ VPIADENVVA+AMRAVH E LA+D+  LL G++VPV LLL+YDVA AV AIPH +A+NRLRYA LLSRR +LVPTA  AR+DKV+ +S IH++DAEGRVVGRKWL + +I + S C A V AY  S D NVNSAE+ GT +A+ TVLLITLPQL+VE IGAGY+I +LYRGC+PM  +M+R  VAFLKEC+RKGA+VEGVISGRHGCFLLG ARG L++GPVKV DLDDRWDYG++DRGVLCLRYRG+VGDMQVRE+++DGKMCRWWHCAVVGS IVKGV K EVL+ LG GEIG
Sbjct:    1 MREFCIALINAGVVIVTRRQAEQTLSAWFGADTVSAAPIRRSMPTGEVALLLRANPDVVENDDNVLGFHRIYRDGVPLRRYIAMLRRLCAADFVSAENERFVDKDYYLKKVQAWFASGHATVLERHTGVEYFALFRSGTCVLVSVGVYEATDRPCTPFFHFVHAGSSLQHTCGHDMLGIADVEGQQALREMLLEVVPILGGPSMALIYAVSSSVVASFRFAKVELCRAVHSTGGRLGDLSWVYRCTPAYDVVPIADENVVAKAMRAVHDESLADDIAHLLEGDNVPVGLLLRYDVAKAVCAIPHSQAVNRLRYAGLLSRRDLLVPTAIYARHDKVQCSSIIHSVDAEGRVVGRKWL-IRVIALFSLCAAVVTAYLFSLDRNVNSAEVFGTGIAMVTVLLITLPQLYVECIGAGYSIRELYRGCVPMAALMEREGVAFLKECLRKGADVEGVISGRHGCFLLGTARGGLEVGPVKVDDLDDRWDYGLNDRGVLCLRYRGIVGDMQVREQEVDGKMCRWWHCAVVGSTIVKGVSKCEVLDKLGQGEIG 545

The following BLAST results are available for this feature:

BLAST of Gcaud1679.t1 vs. uniprot

BLAST of Gcaud1679.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IXK9_9FLOR	1.350e-261	67.58	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..353
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 354..374
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 375..385
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 386..404
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 405..545
None	No IPR available	TMHMM	TMhelix		coord: 354..376
None	No IPR available	TMHMM	TMhelix		coord: 383..405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_494_length_23790_cov_4.579307	contig	NODE_494_length_23790_cov_4.579307:6973..8610 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1	Gcaud1679.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_494_length_23790_cov_4.579307 6973..8610 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=546bp
MRAFSMALVCDGVVIVTHRRNELSVSNWFPPDSVQAVLCHRNLPEGESAL
LLRAHPNLAEQDSVSGVQTALLNDFLSRRCIAALRCLCKADFVSAENEHF
VHDRYYLNKIKAWSAAGHATVLECHTGVEYFSLFRPGVCVLISVGVYAAT
DRPCTTFFDFVYAGAPLQYTCGHDMLGLADAEGQDVLRNMLRDVVSLLGG
PSMALIYAVSSNSIAGFRYVKVELCRAEYSRRGTLGDLSWICRSVAAYEA
VPIADENVVAEAMRAVHHEDLANDVEQLLRGNDVPVRLLLKYDVASAVRA
IPHRRAMNRLRYAALLSRRTMLVPTAANARYDKVRATSAIHAIDAEGRVV
GRKWLALALIVVASACGAAVAAYCISRDENVNSAEIIGTALAVGTVLLIT
LPQLHVETIGAGYTIGDLYRGCMPMTVVMQRRDVAFLKECVRKGANVEGV
ISGRHGCFLLGRARGNLDIGPVKVRDLDDRWDYGVSDRGVLCLRYRGLVG
DMQVRERKIDGKMCRWWHCAVVGSKIVKGVGKAEVLEYLGDGEIG*