Gcaud1679.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1679.t1
Unique Name	Gcaud1679.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_494_length_23790_cov_4.579307	contig	NODE_494_length_23790_cov_4.579307:6973..8610 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1679	Gcaud1679	Gracilaria caudata M_176_S67 male	gene	NODE_494_length_23790_cov_4.579307 6973..8610 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1.stop1	Gcaud1679.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_494_length_23790_cov_4.579307 6973..6975 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1.CDS1	Gcaud1679.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_494_length_23790_cov_4.579307 6973..8610 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1.exon1	Gcaud1679.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_494_length_23790_cov_4.579307 6973..8610 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1.start1	Gcaud1679.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_494_length_23790_cov_4.579307 8608..8610 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1679.t1	Gcaud1679.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_494_length_23790_cov_4.579307 6973..8610 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_494_length_23790_cov_4.579307:6973..8610-
coding sequence from alignment at NODE_494_length_23790_cov_4.579307:6973..8610-

mRNA sequence

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp
MRAFSMALVCDGVVIVTHRRNELSVSNWFPPDSVQAVLCHRNLPEGESAL
LLRAHPNLAEQDSVSGVQTALLNDFLSRRCIAALRCLCKADFVSAENEHF
VHDRYYLNKIKAWSAAGHATVLECHTGVEYFSLFRPGVCVLISVGVYAAT
DRPCTTFFDFVYAGAPLQYTCGHDMLGLADAEGQDVLRNMLRDVVSLLGG
PSMALIYAVSSNSIAGFRYVKVELCRAEYSRRGTLGDLSWICRSVAAYEA
VPIADENVVAEAMRAVHHEDLANDVEQLLRGNDVPVRLLLKYDVASAVRA
IPHRRAMNRLRYAALLSRRTMLVPTAANARYDKVRATSAIHAIDAEGRVV
GRKWLALALIVVASACGAAVAAYCISRDENVNSAEIIGTALAVGTVLLIT
LPQLHVETIGAGYTIGDLYRGCMPMTVVMQRRDVAFLKECVRKGANVEGV
ISGRHGCFLLGRARGNLDIGPVKVRDLDDRWDYGVSDRGVLCLRYRGLVG
DMQVRERKIDGKMCRWWHCAVVGSKIVKGVGKAEVLEYLGDGEIG*

spliced messenger RNA

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:6973..8610- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCTTTTCCATGGCCCTGGTCTGCGACGGTGTTGTCATAGTTAC
TCACCGCCGAAATGAACTATCCGTGTCTAACTGGTTTCCGCCGGATAGTG
TGCAAGCTGTGCTATGTCATCGAAACTTGCCAGAAGGCGAATCTGCCCTT
CTTCTGCGCGCACATCCCAACCTTGCGGAACAAGACAGTGTTAGCGGCGT
TCAAACTGCGCTTCTGAATGATTTTCTCAGTCGACGATGCATCGCCGCAC
TCCGCTGCCTTTGTAAGGCAGACTTTGTGTCAGCAGAAAATGAGCACTTT
GTTCACGATCGCTATTACTTGAACAAGATAAAAGCCTGGTCTGCTGCAGG
CCATGCAACCGTCTTGGAGTGCCACACAGGCGTCGAGTACTTTTCGCTGT
TCAGACCAGGCGTTTGTGTGCTCATTTCCGTCGGTGTATACGCGGCAACG
GACAGACCGTGCACAACATTCTTCGACTTCGTGTACGCAGGTGCGCCGCT
GCAGTACACTTGCGGTCACGACATGCTTGGATTAGCCGATGCTGAGGGAC
AAGATGTCTTACGCAATATGCTTCGCGATGTTGTATCGTTGCTCGGCGGG
CCAAGCATGGCTTTGATATATGCCGTGTCATCGAATTCTATAGCAGGGTT
TCGATATGTGAAGGTGGAGCTTTGCAGAGCCGAATACTCACGCAGAGGAA
CTTTGGGTGATCTGTCGTGGATATGCAGGTCTGTGGCGGCATATGAAGCC
GTTCCAATCGCTGATGAGAACGTTGTTGCTGAGGCCATGCGTGCAGTACA
TCATGAGGATCTTGCGAATGATGTCGAGCAGTTGCTTCGGGGAAATGACG
TTCCAGTGCGATTGTTGTTAAAGTATGACGTCGCCAGCGCAGTACGCGCC
ATTCCGCATAGACGAGCGATGAATCGATTAAGATACGCGGCTCTACTCTC
GCGGCGTACTATGTTAGTGCCAACTGCTGCGAATGCGCGTTACGATAAGG
TGAGAGCCACTTCGGCCATCCATGCAATAGACGCCGAAGGTCGAGTGGTT
GGGCGGAAATGGCTTGCGCTTGCATTGATCGTCGTTGCATCGGCTTGCGG
GGCTGCTGTAGCTGCATACTGTATCTCGCGTGATGAGAACGTGAACAGCG
CAGAGATTATCGGTACCGCCCTTGCAGTGGGTACGGTTCTCTTGATCACG
CTTCCACAGCTTCACGTTGAAACAATTGGGGCGGGATACACAATCGGAGA
TTTGTACCGCGGATGTATGCCGATGACGGTCGTGATGCAGAGAAGGGATG
TAGCATTTCTCAAAGAATGTGTGCGAAAAGGGGCAAATGTGGAGGGTGTC
ATCTCCGGGAGACATGGATGCTTTCTTTTAGGAAGAGCAAGAGGGAATCT
CGACATTGGTCCGGTGAAAGTTCGGGATCTTGACGATCGGTGGGATTATG
GCGTGAGCGACAGGGGCGTCTTGTGCTTAAGGTACCGAGGGCTTGTCGGT
GACATGCAGGTGCGAGAGCGAAAGATAGACGGCAAAATGTGTCGGTGGTG
GCATTGTGCAGTAGTTGGAAGCAAGATTGTCAAAGGCGTGGGCAAGGCTG
AAGTGCTCGAATATCTTGGCGATGGTGAAATCGGGTGA

protein sequence of Gcaud1679.t1

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=546bp
MRAFSMALVCDGVVIVTHRRNELSVSNWFPPDSVQAVLCHRNLPEGESAL
LLRAHPNLAEQDSVSGVQTALLNDFLSRRCIAALRCLCKADFVSAENEHF
VHDRYYLNKIKAWSAAGHATVLECHTGVEYFSLFRPGVCVLISVGVYAAT
DRPCTTFFDFVYAGAPLQYTCGHDMLGLADAEGQDVLRNMLRDVVSLLGG
PSMALIYAVSSNSIAGFRYVKVELCRAEYSRRGTLGDLSWICRSVAAYEA
VPIADENVVAEAMRAVHHEDLANDVEQLLRGNDVPVRLLLKYDVASAVRA
IPHRRAMNRLRYAALLSRRTMLVPTAANARYDKVRATSAIHAIDAEGRVV
GRKWLALALIVVASACGAAVAAYCISRDENVNSAEIIGTALAVGTVLLIT
LPQLHVETIGAGYTIGDLYRGCMPMTVVMQRRDVAFLKECVRKGANVEGV
ISGRHGCFLLGRARGNLDIGPVKVRDLDDRWDYGVSDRGVLCLRYRGLVG
DMQVRERKIDGKMCRWWHCAVVGSKIVKGVGKAEVLEYLGDGEIG*

mRNA from alignment at NODE_494_length_23790_cov_4.579307:6973..8610-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:6973..8610- (Gracilaria caudata M_176_S67 male)
ATGCGCGCCTTTTCCATGGCCCTGGTCTGCGACGGTGTTGTCATAGTTAC
TCACCGCCGAAATGAACTATCCGTGTCTAACTGGTTTCCGCCGGATAGTG
TGCAAGCTGTGCTATGTCATCGAAACTTGCCAGAAGGCGAATCTGCCCTT
CTTCTGCGCGCACATCCCAACCTTGCGGAACAAGACAGTGTTAGCGGCGT
TCAAACTGCGCTTCTGAATGATTTTCTCAGTCGACGATGCATCGCCGCAC
TCCGCTGCCTTTGTAAGGCAGACTTTGTGTCAGCAGAAAATGAGCACTTT
GTTCACGATCGCTATTACTTGAACAAGATAAAAGCCTGGTCTGCTGCAGG
CCATGCAACCGTCTTGGAGTGCCACACAGGCGTCGAGTACTTTTCGCTGT
TCAGACCAGGCGTTTGTGTGCTCATTTCCGTCGGTGTATACGCGGCAACG
GACAGACCGTGCACAACATTCTTCGACTTCGTGTACGCAGGTGCGCCGCT
GCAGTACACTTGCGGTCACGACATGCTTGGATTAGCCGATGCTGAGGGAC
AAGATGTCTTACGCAATATGCTTCGCGATGTTGTATCGTTGCTCGGCGGG
CCAAGCATGGCTTTGATATATGCCGTGTCATCGAATTCTATAGCAGGGTT
TCGATATGTGAAGGTGGAGCTTTGCAGAGCCGAATACTCACGCAGAGGAA
CTTTGGGTGATCTGTCGTGGATATGCAGGTCTGTGGCGGCATATGAAGCC
GTTCCAATCGCTGATGAGAACGTTGTTGCTGAGGCCATGCGTGCAGTACA
TCATGAGGATCTTGCGAATGATGTCGAGCAGTTGCTTCGGGGAAATGACG
TTCCAGTGCGATTGTTGTTAAAGTATGACGTCGCCAGCGCAGTACGCGCC
ATTCCGCATAGACGAGCGATGAATCGATTAAGATACGCGGCTCTACTCTC
GCGGCGTACTATGTTAGTGCCAACTGCTGCGAATGCGCGTTACGATAAGG
TGAGAGCCACTTCGGCCATCCATGCAATAGACGCCGAAGGTCGAGTGGTT
GGGCGGAAATGGCTTGCGCTTGCATTGATCGTCGTTGCATCGGCTTGCGG
GGCTGCTGTAGCTGCATACTGTATCTCGCGTGATGAGAACGTGAACAGCG
CAGAGATTATCGGTACCGCCCTTGCAGTGGGTACGGTTCTCTTGATCACG
CTTCCACAGCTTCACGTTGAAACAATTGGGGCGGGATACACAATCGGAGA
TTTGTACCGCGGATGTATGCCGATGACGGTCGTGATGCAGAGAAGGGATG
TAGCATTTCTCAAAGAATGTGTGCGAAAAGGGGCAAATGTGGAGGGTGTC
ATCTCCGGGAGACATGGATGCTTTCTTTTAGGAAGAGCAAGAGGGAATCT
CGACATTGGTCCGGTGAAAGTTCGGGATCTTGACGATCGGTGGGATTATG
GCGTGAGCGACAGGGGCGTCTTGTGCTTAAGGTACCGAGGGCTTGTCGGT
GACATGCAGGTGCGAGAGCGAAAGATAGACGGCAAAATGTGTCGGTGGTG
GCATTGTGCAGTAGTTGGAAGCAAGATTGTCAAAGGCGTGGGCAAGGCTG
AAGTGCTCGAATATCTTGGCGATGGTGAAATCGGGTGA

Coding sequence (CDS) from alignment at NODE_494_length_23790_cov_4.579307:6973..8610-

>Gcaud1679.t1 ID=Gcaud1679.t1|Name=Gcaud1679.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1638bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:6973..8610- (Gracilaria caudata M_176_S67 male)
ATGCGCGCCTTTTCCATGGCCCTGGTCTGCGACGGTGTTGTCATAGTTAC
TCACCGCCGAAATGAACTATCCGTGTCTAACTGGTTTCCGCCGGATAGTG
TGCAAGCTGTGCTATGTCATCGAAACTTGCCAGAAGGCGAATCTGCCCTT
CTTCTGCGCGCACATCCCAACCTTGCGGAACAAGACAGTGTTAGCGGCGT
TCAAACTGCGCTTCTGAATGATTTTCTCAGTCGACGATGCATCGCCGCAC
TCCGCTGCCTTTGTAAGGCAGACTTTGTGTCAGCAGAAAATGAGCACTTT
GTTCACGATCGCTATTACTTGAACAAGATAAAAGCCTGGTCTGCTGCAGG
CCATGCAACCGTCTTGGAGTGCCACACAGGCGTCGAGTACTTTTCGCTGT
TCAGACCAGGCGTTTGTGTGCTCATTTCCGTCGGTGTATACGCGGCAACG
GACAGACCGTGCACAACATTCTTCGACTTCGTGTACGCAGGTGCGCCGCT
GCAGTACACTTGCGGTCACGACATGCTTGGATTAGCCGATGCTGAGGGAC
AAGATGTCTTACGCAATATGCTTCGCGATGTTGTATCGTTGCTCGGCGGG
CCAAGCATGGCTTTGATATATGCCGTGTCATCGAATTCTATAGCAGGGTT
TCGATATGTGAAGGTGGAGCTTTGCAGAGCCGAATACTCACGCAGAGGAA
CTTTGGGTGATCTGTCGTGGATATGCAGGTCTGTGGCGGCATATGAAGCC
GTTCCAATCGCTGATGAGAACGTTGTTGCTGAGGCCATGCGTGCAGTACA
TCATGAGGATCTTGCGAATGATGTCGAGCAGTTGCTTCGGGGAAATGACG
TTCCAGTGCGATTGTTGTTAAAGTATGACGTCGCCAGCGCAGTACGCGCC
ATTCCGCATAGACGAGCGATGAATCGATTAAGATACGCGGCTCTACTCTC
GCGGCGTACTATGTTAGTGCCAACTGCTGCGAATGCGCGTTACGATAAGG
TGAGAGCCACTTCGGCCATCCATGCAATAGACGCCGAAGGTCGAGTGGTT
GGGCGGAAATGGCTTGCGCTTGCATTGATCGTCGTTGCATCGGCTTGCGG
GGCTGCTGTAGCTGCATACTGTATCTCGCGTGATGAGAACGTGAACAGCG
CAGAGATTATCGGTACCGCCCTTGCAGTGGGTACGGTTCTCTTGATCACG
CTTCCACAGCTTCACGTTGAAACAATTGGGGCGGGATACACAATCGGAGA
TTTGTACCGCGGATGTATGCCGATGACGGTCGTGATGCAGAGAAGGGATG
TAGCATTTCTCAAAGAATGTGTGCGAAAAGGGGCAAATGTGGAGGGTGTC
ATCTCCGGGAGACATGGATGCTTTCTTTTAGGAAGAGCAAGAGGGAATCT
CGACATTGGTCCGGTGAAAGTTCGGGATCTTGACGATCGGTGGGATTATG
GCGTGAGCGACAGGGGCGTCTTGTGCTTAAGGTACCGAGGGCTTGTCGGT
GACATGCAGGTGCGAGAGCGAAAGATAGACGGCAAAATGTGTCGGTGGTG
GCATTGTGCAGTAGTTGGAAGCAAGATTGTCAAAGGCGTGGGCAAGGCTG
AAGTGCTCGAATATCTTGGCGATGGTGAAATCGGGTGA