Gcaud1677.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1677.t1
Unique NameGcaud1677.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length264
Homology
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A2V3IRS4_9FLOR (Exosome complex component RRP46 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRS4_9FLOR)

HSP 1 Score: 375 bits (963), Expect = 3.750e-129
Identity = 193/262 (73.66%), Postives = 229/262 (87.40%), Query Frame = 0
Query:    1 MDVDTPPFRGQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGLEQKAAIRQIWNA 262
            MD D+  FRG+G+GVDAMLGMRTE+ AGRRDGR+ GEMRAM+VS+GEL+RADGSAR++LG TDV+VAIYGP++CPHNKQ  EA+HVHVA+ RREAM   +A A +    ES++TRDL+A V+DVVL  LHPRKAVVVAVQVL+D+GGV+ A+INAT++AL+DAGLP+RALPLAASVSIHNNA+IVDPV+VEEREA AV+ I  DTALE DDGFMSVYT+GDCGGEE+FAA V VCRQLVVKTRAF RL LE+KAA+  IWNA
Sbjct:    1 MDADSLSFRGEGSGVDAMLGMRTESTAGRRDGRSHGEMRAMSVSYGELTRADGSARVRLGTTDVLVAIYGPIECPHNKQDAEAVHVHVAFGRREAMSN-VAGAETGAGTESMITRDLEALVSDVVLATLHPRKAVVVAVQVLADSGGVICAAINATTIALIDAGLPLRALPLAASVSIHNNAIIVDPVVVEEREADAVVCIVFDTALENDDGFMSVYTMGDCGGEELFAATVEVCRQLVVKTRAFFRLSLERKAAVHHIWNA 261          
BLAST of Gcaud1677.t1 vs. uniprot
Match: R7Q866_CHOCR (Exosome component 5 Rrp46 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q866_CHOCR)

HSP 1 Score: 275 bits (704), Expect = 1.280e-89
Identity = 150/263 (57.03%), Postives = 191/263 (72.62%), Query Frame = 0
Query:    4 DTPPFRGQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSN---ESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGLEQKAAIRQIWNAS 263
            D   F G GTGVDAM G  T  +AGRRDGR+  EMR++++SHG L  ADGSAR++LG TDV+VA+YGPM CP  +Q  E +HV VA+RRR    +  A     + N   E++  RDL+  V ++V+  LHPRKA VVAVQVL+DNGGV+AA+IN T MAL+DAG+PMRA+P AASVS++N A++VDPVL+EE EA  VIT   DT+L  ++GFMSVYT GDC G+ +FAAA+   R L +KT AFL+L LEQKAA R  WN +
Sbjct:   12 DALEFSGVGTGVDAMSG--TPLSAGRRDGRSASEMRSLSISHGPLVAADGSARVRLGATDVVVAVYGPMGCPVPRQDAEQMHVSVAFRRRAGTTSGGAGGKGDSINAGKEAIAGRDLKKVVEEIVMAILHPRKAAVVAVQVLADNGGVIAAAINGTVMALVDAGMPMRAVPSAASVSLYNGAIVVDPVLIEEVEADGVITFVFDTSLADENGFMSVYTDGDCTGDSMFAAALETSRDLALKTMAFLKLSLEQKAAQRLTWNTT 272          
BLAST of Gcaud1677.t1 vs. uniprot
Match: UPI001E1DA4FB (exosome complex component RRP41-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA4FB)

HSP 1 Score: 194 bits (494), Expect = 5.700e-58
Identity = 112/243 (46.09%), Postives = 157/243 (64.61%), Query Frame = 0
Query:   10 GQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALA-AANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGLE 251
            G G+G DA LG+ T   AGRRDGR  G MR ++ + G+L R DGS+RI++G TDV+VA+YGPM+CP ++Q V+   VHV++R   +     A A   +   E+V  RDL+  V   V+  LHPRKA+ +AV VLSD+GG  AA+INAT +AL+DAG+ +R++  AA V++HNNA+IVDP  VEE EA AVIT+T +T        +  Y  G  G  E + +AV   R++   TR F+ L ++
Sbjct:   17 GGGSGSDAALGICTSQRAGRRDGRGAGTMREISATQGDLLRCDGSSRIRIGLTDVLVAVYGPMECPVHRQLVDRADVHVSFRHHASSSTMNAFATRKSLPGEAVAARDLREIVLQSVIVKLHPRKAIAIAVHVLSDDGGASAAAINATFLALVDAGVSLRSVLTAACVTVHNNAIIVDPEAVEEAEADAVITLTFETKKGTSANVVGSYCHGVLGSYENYQSAVQTARKISDGTREFMELAVK 259          
BLAST of Gcaud1677.t1 vs. uniprot
Match: S2JKZ7_MUCC1 (Uncharacterized protein n=3 Tax=Mucor TaxID=4830 RepID=S2JKZ7_MUCC1)

HSP 1 Score: 100 bits (250), Expect = 4.310e-22
Identity = 69/222 (31.08%), Postives = 116/222 (52.25%), Query Frame = 0
Query:   37 EMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMR--ALPLAASVSIHNNALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGG---EEIFAAAVAVCRQLVVKTRAFLRLGLEQK 253
            ++RA + S   L+RADGS++ + G T VI ++ GPMD     ++++   V V  R  + +         AT+ E ++   L+     V+L  + PR  V + +Q+  D+G ++AAS+NA ++ALLDAG+PM+  A  + A +    N L++DP  VE   A +V T   D    K      +  + D  G   E+ + +   +C + V K + FLR+ +E K
Sbjct:   13 QLRAFSASQNILNRADGSSKFEFGSTSVICSVSGPMDVQIRDEKLDEATVEVVVRPAKGV---------ATTREKLMESILRTAFEPVILGGMLPRTLVQIVIQITKDDGAILAASVNAITLALLDAGIPMKHMAAAITAMIDSKTNELVLDPTAVELENAKSVHTFAFDNVNTKP-----MVLLSDSEGLFSEDEYFSCHDLCFEAVEKVQGFLRVAVESK 220          
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A7S1X548_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X548_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 3.960e-21
Identity = 74/226 (32.74%), Postives = 117/226 (51.77%), Query Frame = 0
Query:   21 MRTETNAGRRDGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNALI-VDPVLVEEREAHAVITITIDTAL--------EKDDGFMSVYTIGDCGGEEIFAAAVAVCRQ 237
            M  +  A R DGR    +R   +    L+RADGSA  +  GT+V+ A+YGP + P  ++  E + V V +R R  M      + +    E V+ R L+  +    L  +HPR  V V +QV+SD+G +++A++NA   AL+DAGLPM  L  + + ++    L+ VDP   EE+EA AV+ + +D           +KD   ++ YT G    +E +   V   R+
Sbjct:    1 MSADHYAERLDGRGGSTLRQFHLERACLNRADGSASWRQEGTEVLAAVYGPAEAPSRRENPECMVVEVLFRPRAGM-----VSRTDREYEHVVRRTLETAL----LRTVHPRTVVQVVLQVVSDDGSLLSAALNAACFALVDAGLPMSRLFSSVTCAVLPGPLVLVDPTREEEKEATAVVCLALDNCPRGAVSIEGDKDAKVITSYTAGTFS-QEAYLGVVLFSRE 216          
BLAST of Gcaud1677.t1 vs. uniprot
Match: F2TXJ8_SALR5 (RNase_PH domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TXJ8_SALR5)

HSP 1 Score: 97.4 bits (241), Expect = 6.730e-21
Identity = 73/224 (32.59%), Postives = 120/224 (53.57%), Query Frame = 0
Query:   31 DGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTAL-----HPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVITITIDTALEKDDG--FMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLR 247
            DGR   E+R M      L + DGSA    G + V+ A+YGP D P ++++ +   V VA+             +SA  NE      LQ+ +T+ V+ AL      PR A+ V +Q L+++GG++A +INAT +AL+DAG+ + A+  AAS ++ +  LI+DP L+E+ +A+AV+         K +   F+++++ G C  +++     AV         AFLR
Sbjct:    7 DGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEVAW-------------HSAPDNEQGAA--LQSHLTEFVVNALASIHDFPRSAIRVVIQELNNDGGMLACAINATCLALMDAGISLTAMFAAASCAVVDGQLILDPTLIEQNKANAVVVTGACKQASKVNAAEFVALHSSGPCAPKQMVTVLEAV-ESATAAVAAFLR 214          
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A2G4SM17_RHIZD (Ribosomal protein S5 domain 2-like protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SM17_RHIZD)

HSP 1 Score: 97.4 bits (241), Expect = 7.850e-21
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 0
Query:   37 EMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHN-NALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGG---EEIFAAAVAVCRQLVVKTRAFLRLGLEQK 253
            ++RA + +   L RADGSAR  LG T VI ++ GPM+     ++++   V V  R    +         A++ E ++   L+ T   ++L  + PR  V + VQ++ D+G V+AA++NA ++ALLDAG+P++ +  + +  I   N +I+DP   E   A +V T   D         +S     D  G   EE +     +C Q V +  +F+R  +E K
Sbjct:   12 QLRAFSATQNVLHRADGSARFDLGATSVICSVSGPMEVQLRDEKLDEATVEVVVRPSSGI---------ASTKEKLIENTLRTTFEPIILGGMMPRTLVQIVVQIIKDDGSVIAAAVNAIALALLDAGIPLKYMAASVTCMIDKTNNIILDPTAAELENAKSVHTFAFDNTPRTTTVLLS-----DSSGVFSEEEYIECYDLCHQAVGQVHSFIRAAVEAK 218          
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-20
Identity = 74/227 (32.60%), Postives = 121/227 (53.30%), Query Frame = 0
Query:   29 RRDGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNK-QQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNA-LIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGLEQK 253
            R DGR   E+R ++   G L+RADGSAR   G T V+ ++ GP      + ++V+A  V V ++  +          + T+ +      L+ T   +V    +PR  + + VQV+ D+G ++A +INA ++ALLDAG+PMR+L  A + SI ++  L +DP L E   A A +T        K+DG ++  T G     + FAA+  +CR+ +    +F+R+  E K
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDK---------GAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILDDGQLCLDPSLTEGDAATASVTAAY---AGKNDGILTSITTGLVNESQYFAAS-EICRRAIDSVLSFVRIAQESK 223          
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.220e-20
Identity = 78/249 (31.33%), Postives = 122/249 (49.00%), Query Frame = 0
Query:   31 DGRAQGEMRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMD-CPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIHNNA-----------------LIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGLEQKAAIRQIWN 261
            DGR   ++R +    G L+RADGS R   G T V+VA+YGP       K++ +   + V++R  +       A  SA +   +  R    T+ + V  A +PR  + V VQVL D+G V++A+INA +MAL+DAG+ M  +P+AA+     +                  L +DP   EE    A + + +   L   DG +++   G  G EE+FAA+ A  R+       +LR  +E K  +R + N
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKG------AQTSADAERELYVRR---TLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAV---LAGSDGILTMKMTGQLGAEELFAASEAA-RKACDAVSVYLRRAVEAKV-LRDVAN 242          
BLAST of Gcaud1677.t1 vs. uniprot
Match: A0A6J3EMB3_AYTFU (exosome complex component RRP46 n=3 Tax=Anseriformes TaxID=8826 RepID=A0A6J3EMB3_AYTFU)

HSP 1 Score: 95.9 bits (237), Expect = 2.350e-20
Identity = 70/200 (35.00%), Postives = 104/200 (52.00%), Query Frame = 0
Query:   38 MRAMTVSHGELSRADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAALAAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVAASINATSMALLDAGLPMRALPLAASVSIH-NNALIVDPVLVEEREAHAVITITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCR 236
            +R  +   G LSR DGSA    G T V+  +YGP +   +K+  E   + V  R +  +           S E +L +  +A    VVL ALHPR A+ + +QVLSD G +++  +NA  M LLDAGLP+ AL    + ++    A+++DP   +E+EA AV+T  ID+  +K    +   T G C  EE+    VA  R
Sbjct:    8 LRPFSCEQGLLSRPDGSAAFVQGDTSVLAGLYGPAEVRGSKESPERATLEVLLRPKVGLPGV-----GERSREQLLRQTCEA----VVLGALHPRTAITLVLQVLSDAGSLLSCCLNAACMGLLDAGLPLSALFCGVTCALDAQGAIVLDPTTRQEQEARAVLTFAIDSTEKK---VLMATTRGSCSVEEMQQCLVAAQR 195          
The following BLAST results are available for this feature:
BLAST of Gcaud1677.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRS4_9FLOR3.750e-12973.66Exosome complex component RRP46 n=2 Tax=Gracilario... [more]
R7Q866_CHOCR1.280e-8957.03Exosome component 5 Rrp46 n=1 Tax=Chondrus crispus... [more]
UPI001E1DA4FB5.700e-5846.09exosome complex component RRP41-like n=1 Tax=Merce... [more]
S2JKZ7_MUCC14.310e-2231.08Uncharacterized protein n=3 Tax=Mucor TaxID=4830 R... [more]
A0A7S1X548_9CHLO3.960e-2132.74Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
F2TXJ8_SALR56.730e-2132.59RNase_PH domain-containing protein n=1 Tax=Salping... [more]
A0A2G4SM17_RHIZD7.850e-2130.32Ribosomal protein S5 domain 2-like protein n=4 Tax... [more]
A0A024TBK6_9STRA1.630e-2032.60Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A835ZF16_9STRA2.220e-2031.33Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A6J3EMB3_AYTFU2.350e-2035.00exosome complex component RRP46 n=3 Tax=Anseriform... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 37..166
e-value: 1.7E-22
score: 80.3
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 27..259
e-value: 4.5E-45
score: 155.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 21..250
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 165..255
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 27..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_494_length_23790_cov_4.579307contigNODE_494_length_23790_cov_4.579307:3229..4020 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1Gcaud1677.t1Gracilaria caudata M_176_S67 malemRNANODE_494_length_23790_cov_4.579307 3229..4020 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MDVDTPPFRGQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSR
ADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAAL
AAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVA
ASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVIT
ITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGL
EQKAAIRQIWNAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold