Gcaud1677.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1677.t1
Unique NameGcaud1677.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_494_length_23790_cov_4.579307contigNODE_494_length_23790_cov_4.579307:3229..4020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI45622
PFAMsRNase_PH,RNase_PH_C
Max annot lvl4776|Peronosporales
KEGG koko:K12590
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Evalue1.85e-23
EggNOG OGsCOG0689@1|root,KOG1069@2759|Eukaryota,3QFUE@4776|Peronosporales
Description3' exoribonuclease family, domain 1
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1677Gcaud1677Gracilaria caudata M_176_S67 malegeneNODE_494_length_23790_cov_4.579307 3229..4020 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1.stop1Gcaud1677.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_494_length_23790_cov_4.579307 3229..3231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1.CDS1Gcaud1677.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_494_length_23790_cov_4.579307 3229..4020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1.exon1Gcaud1677.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_494_length_23790_cov_4.579307 3229..4020 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1.start1Gcaud1677.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_494_length_23790_cov_4.579307 4018..4020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1677.t1Gcaud1677.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_494_length_23790_cov_4.579307 3229..4020 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
MDVDTPPFRGQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSR
ADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAAL
AAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVA
ASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVIT
ITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGL
EQKAAIRQIWNAS*
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spliced messenger RNA

>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:3229..4020- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGATACGCCTCCATTTCGAGGACAAGGTACAGGCGTGGATGC
CATGCTAGGCATGAGAACCGAAACAAATGCCGGTCGACGAGACGGTAGAG
CCCAGGGCGAAATGCGTGCGATGACCGTGTCACACGGTGAATTGAGTCGA
GCCGATGGTTCTGCGCGTATTAAGCTAGGTGGAACCGATGTCATTGTAGC
GATATACGGACCTATGGATTGCCCCCATAACAAGCAGCAAGTGGAGGCAC
TGCATGTACATGTAGCTTACCGTCGTCGTGAGGCAATGGGAGCTGCGCTC
GCCGCGGCAAATTCTGCGACTTCGAACGAGTCAGTGTTAACGAGAGATCT
ACAAGCGACTGTGACGGATGTGGTTCTCACGGCACTACACCCACGCAAAG
CTGTGGTCGTCGCGGTTCAAGTGCTTTCGGACAACGGTGGAGTTGTTGCG
GCTTCGATTAATGCCACATCAATGGCCCTGTTAGACGCTGGTCTGCCCAT
GAGGGCGCTACCGCTTGCGGCTTCAGTGTCGATCCACAACAACGCACTCA
TTGTAGATCCAGTTCTAGTGGAGGAGAGGGAGGCTCACGCCGTAATAACT
ATTACAATCGATACGGCGCTAGAAAAAGATGACGGCTTTATGTCAGTGTA
TACAATAGGGGACTGCGGGGGGGAGGAAATATTTGCAGCCGCAGTCGCAG
TTTGCCGTCAACTCGTAGTCAAGACGAGAGCGTTCCTTCGGCTCGGCCTG
GAGCAGAAGGCCGCGATACGACAGATTTGGAACGCTTCGTAG
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protein sequence of Gcaud1677.t1

>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MDVDTPPFRGQGTGVDAMLGMRTETNAGRRDGRAQGEMRAMTVSHGELSR
ADGSARIKLGGTDVIVAIYGPMDCPHNKQQVEALHVHVAYRRREAMGAAL
AAANSATSNESVLTRDLQATVTDVVLTALHPRKAVVVAVQVLSDNGGVVA
ASINATSMALLDAGLPMRALPLAASVSIHNNALIVDPVLVEEREAHAVIT
ITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLGL
EQKAAIRQIWNAS*
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mRNA from alignment at NODE_494_length_23790_cov_4.579307:3229..4020-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:3229..4020- (Gracilaria caudata M_176_S67 male)
ATGGACGTCGATACGCCTCCATTTCGAGGACAAGGTACAGGCGTGGATGC
CATGCTAGGCATGAGAACCGAAACAAATGCCGGTCGACGAGACGGTAGAG
CCCAGGGCGAAATGCGTGCGATGACCGTGTCACACGGTGAATTGAGTCGA
GCCGATGGTTCTGCGCGTATTAAGCTAGGTGGAACCGATGTCATTGTAGC
GATATACGGACCTATGGATTGCCCCCATAACAAGCAGCAAGTGGAGGCAC
TGCATGTACATGTAGCTTACCGTCGTCGTGAGGCAATGGGAGCTGCGCTC
GCCGCGGCAAATTCTGCGACTTCGAACGAGTCAGTGTTAACGAGAGATCT
ACAAGCGACTGTGACGGATGTGGTTCTCACGGCACTACACCCACGCAAAG
CTGTGGTCGTCGCGGTTCAAGTGCTTTCGGACAACGGTGGAGTTGTTGCG
GCTTCGATTAATGCCACATCAATGGCCCTGTTAGACGCTGGTCTGCCCAT
GAGGGCGCTACCGCTTGCGGCTTCAGTGTCGATCCACAACAACGCACTCA
TTGTAGATCCAGTTCTAGTGGAGGAGAGGGAGGCTCACGCCGTAATAACT
ATTACAATCGATACGGCGCTAGAAAAAGATGACGGCTTTATGTCAGTGTA
TACAATAGGGGACTGCGGGGGGGAGGAAATATTTGCAGCCGCAGTCGCAG
TTTGCCGTCAACTCGTAGTCAAGACGAGAGCGTTCCTTCGGCTCGGCCTG
GAGCAGAAGGCCGCGATACGACAGATTTGGAACGCTTCGTAG
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Coding sequence (CDS) from alignment at NODE_494_length_23790_cov_4.579307:3229..4020-

>Gcaud1677.t1 ID=Gcaud1677.t1|Name=Gcaud1677.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:3229..4020- (Gracilaria caudata M_176_S67 male)
ATGGACGTCGATACGCCTCCATTTCGAGGACAAGGTACAGGCGTGGATGC
CATGCTAGGCATGAGAACCGAAACAAATGCCGGTCGACGAGACGGTAGAG
CCCAGGGCGAAATGCGTGCGATGACCGTGTCACACGGTGAATTGAGTCGA
GCCGATGGTTCTGCGCGTATTAAGCTAGGTGGAACCGATGTCATTGTAGC
GATATACGGACCTATGGATTGCCCCCATAACAAGCAGCAAGTGGAGGCAC
TGCATGTACATGTAGCTTACCGTCGTCGTGAGGCAATGGGAGCTGCGCTC
GCCGCGGCAAATTCTGCGACTTCGAACGAGTCAGTGTTAACGAGAGATCT
ACAAGCGACTGTGACGGATGTGGTTCTCACGGCACTACACCCACGCAAAG
CTGTGGTCGTCGCGGTTCAAGTGCTTTCGGACAACGGTGGAGTTGTTGCG
GCTTCGATTAATGCCACATCAATGGCCCTGTTAGACGCTGGTCTGCCCAT
GAGGGCGCTACCGCTTGCGGCTTCAGTGTCGATCCACAACAACGCACTCA
TTGTAGATCCAGTTCTAGTGGAGGAGAGGGAGGCTCACGCCGTAATAACT
ATTACAATCGATACGGCGCTAGAAAAAGATGACGGCTTTATGTCAGTGTA
TACAATAGGGGACTGCGGGGGGGAGGAAATATTTGCAGCCGCAGTCGCAG
TTTGCCGTCAACTCGTAGTCAAGACGAGAGCGTTCCTTCGGCTCGGCCTG
GAGCAGAAGGCCGCGATACGACAGATTTGGAACGCTTCGTAG
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