Gcaud2220.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2220.t1
Unique NameGcaud2220.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length408
Homology
BLAST of Gcaud2220.t1 vs. uniprot
Match: R7QJQ1_CHOCR (Uma2 domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QJQ1_CHOCR)

HSP 1 Score: 136 bits (342), Expect = 1.350e-32
Identity = 90/237 (37.97%), Postives = 130/237 (54.85%), Query Frame = 0
Query:  108 GALNLTPCTLDEYFQLPDEADNRYQLIDGILSHR-QMASPRHKVTQLSLATRFNFLNDGRQDNDRIEAILEAKICIPSSNSDEDYDILIADIAIGPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITS-SNRITDITTKRIAYALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSERVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKE 342
            G L+L PC LD Y  LP++A++RY+L++GIL HR  MA+ +H + +  L T+F  +      N+R+    E K+ + S  S     + + D+ +GPY S E   N SP SQ++ F      P +VIEITS SNR+TD+  K   Y   GI  YVI+D E D+VIV KL  + R          SRL     Y+SE VY G+  V+    RE ++TA ++    + A +   SP R+E
Sbjct:   47 GELHLVPCALDVYLDLPNKAEDRYELVEGILFHRPNMANTQHAIIKEFLVTKFRAVK--LTGNNRVNIYPEMKVKVSSGKS-RSPSVRVPDVVVGPYTSSESTGNASPRSQKIIFHEDNI-PLMVIEITSPSNRLTDMNAKSEEYCRTGIATYVIIDRETDRVIVRKLIRNTR----------SRLD----YDSEVVYTGDTLVDCFLFRERNLTAEKIFRPQQTAEEAAQSPTRRE 265          
BLAST of Gcaud2220.t1 vs. uniprot
Match: A0A2V3IIW8_9FLOR (Uma2 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW8_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 2.400e-30
Identity = 87/276 (31.52%), Postives = 147/276 (53.26%), Query Frame = 0
Query:   77 ALPMNANSSSTLGVSQSPLLSQAKLKSNLRPGALNLTPCTLDEYFQLPDEADNRYQLIDGILSHRQMASPRHKVTQLSLATRFNFLNDGRQDNDRIEAILEAKICI-PSSNSD--------EDYDILIADIAIGPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITSSNRITDITTKRIAYALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLS------KKFFYNSERVYEGNEKVEASFLREIDITAAEMVTHARPASDICLS 337
            ++P ++  S      QS LL      S  R   +N   C+L ++ Q+    D+R++LIDGIL +RQ+ +P   + +++ A +    ND R  +      ++  +   PS+NS         +    + AD+++GP++S ++  N SP  + + +P++K  PF+VIEITS+NRI DI  +   YA   I EY I+D + + VI  KL+    D  GR  R S RLS      +   +  + +Y GNE VEAS+L ++ +TA E++   R ++++  S
Sbjct:   19 SIPWHSFKSFVTPPQQSSLLPP----SAARIALVNFVSCSLLQFSQVLQTIDDRFELIDGILRYRQVPAPSQTIRRVT-ANKLELSNDSRNPSTGSPLPVDTAVAYSPSANSPISSNSSRGDGESCVAADMSVGPHISSDQLGNLSPNPRVIHYPVNKWPPFLVIEITSTNRINDIVFRAKLYAQIEIPEYAIIDRQRECVIAQKLNPSTHDIGGRRPRASPRLSDANEHSRLHSFIQKCIYSGNELVEASYLSDLGLTAIELLKPTRYSAEVAHS 289          
BLAST of Gcaud2220.t1 vs. uniprot
Match: R7QMY5_CHOCR (Uma2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMY5_CHOCR)

HSP 1 Score: 126 bits (317), Expect = 1.310e-28
Identity = 85/238 (35.71%), Postives = 130/238 (54.62%), Query Frame = 0
Query:  108 GALNLTPCTLDEYFQLPDEADNRYQLIDGILSHR-QMASPRHKVTQLSLATRFNFLNDGRQDNDRIEAILEAKICIPSSNSDEDYDILIADIAIGPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITS-SNRITDITTKRIAYALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSERVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKER 343
            G L+L PC LD Y  LP++A++RY+L++GIL HR  M   +H + +  +  +F  L      N+R+      K+ + S  S +   + I D+ +GPY S +   N SP SQ++ F      P +VIEIT+ +NR+TD+  K   Y   GI+ YV++D E D+VIV KL  + R          SRL     Y+SE VY G+  V+    RE ++TA ++    + A +   SP+R+ER
Sbjct:   46 GELHLVPCELDVYLDLPNKAEDRYELVEGILFHRPNMTDAQHTIMKGFIMAKF--LTAELTGNNRVNIYTAPKVKVCSGKS-QSPSVRIPDVVVGPYASAQSAGNASPRSQKIIFHEDNI-PRMVIEITTPNNRLTDMDAKSKEYCRTGIETYVMLDRETDRVIVRKLIRNTR----------SRLD----YDSEVVYTGDTLVDCFLFRERNLTAEKIFRPQQTAPEAAQSPIRRER 265          
BLAST of Gcaud2220.t1 vs. uniprot
Match: R7QP02_CHOCR (Uma2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP02_CHOCR)

HSP 1 Score: 89.7 bits (221), Expect = 3.190e-16
Identity = 87/288 (30.21%), Postives = 137/288 (47.57%), Query Frame = 0
Query:   70 PEGPSLRALPMNANSSSTLGVS--QSPLLSQA--KLKSNLRPGALNLTPCTLDEYFQLPDEADNRYQLIDGILSHR-QMASPRHKVTQLSLATRFNFLNDGRQDNDRIEAILEAK-ICIPSSNSDEDYDILIADIAIGPYVSPEERENH------SPTSQRVDFPLSKAAPFVVIEITS-SNRITDITTKRIAYALRGIQEYVIVD--CENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSERVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKE 342
            P  P+L A       S T   S   SPLLSQ    L    RPG L+L PCT+D+YF LP+ ADN+Y+L++GIL  + +MA+  H   +  +A      +         E  LE   +  PS +S    +  +  I   P V   +R++       SP S+++ FP +   P + +E+TS S R  D+T+KR  YA  G+++YVI+D       VIV  L+++     G+ V+++              Y G E V    L  +  +A+  +   R    I  SP++++
Sbjct:    3 PPTPTLGARSSQNPPSPTRSFSPLSSPLLSQPPLSLSPTSRPGDLHLLPCTVDQYFDLPNAADNKYELVEGILWWKSEMATHSHDEIRNRVAAEIGRFHIAENLVVSTEMGLETSGLTTPSGSSHNASEKSLRSIR-RPDVIVSQRDHGLRRCDLSPQSKKISFPRNHP-PLLALEVTSPSTRSADLTSKREEYAKAGVRQYVIIDRATATPAVIVGTLNSN-----GKYVQET--------------YRGEEIVRGGLLDGMSFSASYYLNPPRDVHTIQNSPIKEK 269          
BLAST of Gcaud2220.t1 vs. uniprot
Match: A0A6P0MNS8_9CYAN (Uma2 family endonuclease n=5 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0MNS8_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 8.440e-7
Identity = 58/219 (26.48%), Postives = 96/219 (43.84%), Query Frame = 0
Query:  116 TLDEYFQLPDEADNRYQLIDGILSHRQMASPRHKVTQLSLATRF-NFLN---DGRQDNDRIEAILEAKICIPSSNSDEDYDILIADI--AIGPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITSSNRIT---DITTKRIAYALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSERVYEGNEKVEASFLREIDITAAEMV 325
            TL+EY  L + AD RY+L+DG L      + RH +  L L ++F  F++      +D + +      ++ +P      D  +L  ++  AIG               QR        +P +V+E+ S  ++    D   KR  YA RGI EY IVD    KV VL+L     +                    E ++EG++ V++S L  + +TA +++
Sbjct:    9 TLEEYLTLENNADIRYELVDGQLIEMPPETDRHNLIALYLLSQFLKFISLHLIRHKDTEIVVTGSRIRVRLP------DLMVLTEELFTAIG--------------GQRATITPDMPSPALVVEVVSPGKVNEDRDYRYKRSEYAARGISEYWIVDPHKAKVTVLRLVDGLYE--------------------EAIFEGDDLVQSSILPNLKLTATQIL 187          
The following BLAST results are available for this feature:
BLAST of Gcaud2220.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R7QJQ1_CHOCR1.350e-3237.97Uma2 domain-containing protein n=2 Tax=Chondrus cr... [more]
A0A2V3IIW8_9FLOR2.400e-3031.52Uma2 domain-containing protein n=1 Tax=Gracilariop... [more]
R7QMY5_CHOCR1.310e-2835.71Uma2 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7QP02_CHOCR3.190e-1630.21Uma2 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A6P0MNS8_9CYAN8.440e-726.48Uma2 family endonuclease n=5 Tax=unclassified Symp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 339..359
NoneNo IPR availableCOILSCoilCoilcoord: 364..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..28
NoneNo IPR availablePANTHERPTHR34107SLL0198 PROTEIN-RELATEDcoord: 114..276
NoneNo IPR availablePANTHERPTHR34107:SF2SLL0888 PROTEINcoord: 114..276
IPR012296Nuclease, putative, TT1808GENE3D3.90.1570.10tt1808, chain Acoord: 111..324
e-value: 3.2E-22
score: 80.6
IPR008538Putative restriction endonucleasePFAMPF05685Uma2coord: 117..285
e-value: 3.4E-16
score: 59.3
IPR008538Putative restriction endonucleaseCDDcd06260DUF820coord: 130..278
e-value: 1.66323E-10
score: 57.0541
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 112..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_492_length_23814_cov_5.019981contigNODE_492_length_23814_cov_5.019981:22277..23627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2220.t1Gcaud2220.t1Gracilaria caudata M_176_S67 malemRNANODE_492_length_23814_cov_5.019981 22277..23627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=408bp
MVVRSPMQIQQKFSTQLSRRESHDAPNDTLVRQTHQRLPATYPAGVTASG
PLLPATKRVSKQFGIQFELPEGPSLRALPMNANSSSTLGVSQSPLLSQAK
LKSNLRPGALNLTPCTLDEYFQLPDEADNRYQLIDGILSHRQMASPRHKV
TQLSLATRFNFLNDGRQDNDRIEAILEAKICIPSSNSDEDYDILIADIAI
GPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITSSNRITDITTKRIAY
ALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSE
RVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKERARAKEAE
TRATEATMRATEAVMRATEAEKSAIERAEAAEKNFEAVSKLLISLGHGDK
IVKPSEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012296Nuclease_put_TT1808
IPR008538Uma2
IPR011335Restrct_endonuc-II-like