Gcaud2220.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2220.t1
Unique Name	Gcaud2220.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_492_length_23814_cov_5.019981	contig	NODE_492_length_23814_cov_5.019981:22277..23627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102129.Lepto7375DRAFT_3743
PFAMs	Uma2
Max annot lvl	1117\|Cyanobacteria
Evalue	7.17e-06
EggNOG OGs	COG4636@1\|root,COG4636@2\|Bacteria,1G12C@1117\|Cyanobacteria,1HB8F@1150\|Oscillatoriales
Description	Putative restriction endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2220	Gcaud2220	Gracilaria caudata M_176_S67 male	gene	NODE_492_length_23814_cov_5.019981 22277..23627 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1	Gcaud2220.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_492_length_23814_cov_5.019981 22277..23627 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1.start1	Gcaud2220.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_492_length_23814_cov_5.019981 22277..22279 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1.CDS1	Gcaud2220.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 22277..22491 +
Gcaud2220.t1.CDS2	Gcaud2220.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 22619..23627 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1.exon1	Gcaud2220.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 22277..22491 +
Gcaud2220.t1.exon2	Gcaud2220.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 22619..23627 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1.intron1	Gcaud2220.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_492_length_23814_cov_5.019981 22492..22618 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2220.t1.stop1	Gcaud2220.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_492_length_23814_cov_5.019981 23625..23627 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+
coding sequence from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+

mRNA sequence

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp
MVVRSPMQIQQKFSTQLSRRESHDAPNDTLVRQTHQRLPATYPAGVTASG
PLLPATKRVSKQFGIQFELPEGPSLRALPMNANSSSTLGVSQSPLLSQAK
LKSNLRPGALNLTPCTLDEYFQLPDEADNRYQLIDGILSHRQMASPRHKV
TQLSLATRFNFLNDGRQDNDRIEAILEAKICIPSSNSDEDYDILIADIAI
GPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITSSNRITDITTKRIAY
ALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSE
RVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKERARAKEAE
TRATEATMRATEAVMRATEAEKSAIERAEAAEKNFEAVSKLLISLGHGDK
IVKPSEV*

spliced messenger RNA

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGCGTTCCCCAATGCAGATACAACAAAAGTTCTCTACCCAACT
ATCTCGTCGCGAAAGTCACGATGCTCCAAATGACACACTCGTGCGACAGA
CGCACCAGCGACTGCCAGCAACATATCCGGCAGGCGTGACCGCAAGCGGA
CCACTGCTTCCTGCTACGAAACGAGTGTCCAAGCAATTTGGAATTCAATT
TGAGTTACCAGAAGGCCCGTCCTTGCGTGCTCTGCCAATGAACGCGAACT
CATCGTCAACTTTGGGGGTCTCACAATCTCCGTTACTTTCACAAGCAAAA
CTCAAGTCAAATCTTCGTCCAGGAGCACTTAATTTAACTCCGTGTACTCT
TGATGAATATTTTCAGCTGCCGGACGAAGCGGATAACAGATACCAACTGA
TTGACGGGATACTATCGCACCGTCAAATGGCATCTCCTCGTCACAAAGTA
ACACAGTTGTCACTTGCAACCCGTTTTAACTTTCTAAACGATGGTAGGCA
GGACAATGATCGAATTGAAGCCATCCTCGAAGCAAAGATATGTATACCCT
CAAGCAACAGTGATGAAGATTACGACATTCTGATAGCCGATATCGCAATT
GGACCATATGTATCTCCCGAAGAACGGGAGAATCATTCTCCCACTTCGCA
ACGCGTAGATTTTCCTCTGTCAAAGGCAGCACCATTCGTCGTAATTGAAA
TTACGAGTTCTAACAGAATTACGGATATTACAACGAAGAGAATTGCGTAT
GCCTTGCGTGGTATCCAAGAGTACGTGATTGTAGACTGTGAGAATGACAA
AGTGATTGTGTTGAAGTTAAGTGCAGACCCTCGAGACTGGCAAGGCCGCG
CAGTTCGCAAGTCAAGTCGTCTGAGTAAGAAGTTTTTTTATAATTCCGAA
CGTGTCTATGAAGGAAACGAGAAAGTTGAAGCCTCCTTTTTGCGTGAAAT
TGATATAACTGCTGCAGAAATGGTCACCCATGCAAGACCTGCTTCCGATA
TTTGCTTATCTCCTTTGCGCAAGGAGCGGGCTAGGGCAAAAGAAGCGGAA
ACGAGAGCGACTGAGGCTACAATGAGAGCGACCGAGGCTGTAATGAGAGC
GACTGAGGCTGAAAAGAGTGCGATTGAAAGGGCAGAAGCAGCCGAGAAGA
ACTTTGAGGCCGTATCCAAGTTACTCATTTCACTGGGTCATGGAGATAAA
ATTGTGAAACCAAGTGAAGTTTGA

protein sequence of Gcaud2220.t1

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=408bp
MVVRSPMQIQQKFSTQLSRRESHDAPNDTLVRQTHQRLPATYPAGVTASG
PLLPATKRVSKQFGIQFELPEGPSLRALPMNANSSSTLGVSQSPLLSQAK
LKSNLRPGALNLTPCTLDEYFQLPDEADNRYQLIDGILSHRQMASPRHKV
TQLSLATRFNFLNDGRQDNDRIEAILEAKICIPSSNSDEDYDILIADIAI
GPYVSPEERENHSPTSQRVDFPLSKAAPFVVIEITSSNRITDITTKRIAY
ALRGIQEYVIVDCENDKVIVLKLSADPRDWQGRAVRKSSRLSKKFFYNSE
RVYEGNEKVEASFLREIDITAAEMVTHARPASDICLSPLRKERARAKEAE
TRATEATMRATEAVMRATEAEKSAIERAEAAEKNFEAVSKLLISLGHGDK
IVKPSEV*

mRNA from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1351bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTGCGTTCCCCAATGCAGATACAACAAAAGTTCTCTACCCAACT
ATCTCGTCGCGAAAGTCACGATGCTCCAAATGACACACTCGTGCGACAGA
CGCACCAGCGACTGCCAGCAACATATCCGGCAGGCGTGACCGCAAGCGGA
CCACTGCTTCCTGCTACGAAACGAGTGTCCAAGCAATTTGGAATTCAATT
TGAGTTACCAGAAGGGTAGGTGGATTTGGAGCAACGTGCATGCGCCGGTG
GGTGTCGAGGATTGTTTCTCTTCTTGCTCTTGGTTCATGTCAAACTCTTT
GTCTCACTTACGAATGCACTCATCCTCATCCCCTGTCAACAGCCCGTCCT
TGCGTGCTCTGCCAATGAACGCGAACTCATCGTCAACTTTGGGGGTCTCA
CAATCTCCGTTACTTTCACAAGCAAAACTCAAGTCAAATCTTCGTCCAGG
AGCACTTAATTTAACTCCGTGTACTCTTGATGAATATTTTCAGCTGCCGG
ACGAAGCGGATAACAGATACCAACTGATTGACGGGATACTATCGCACCGT
CAAATGGCATCTCCTCGTCACAAAGTAACACAGTTGTCACTTGCAACCCG
TTTTAACTTTCTAAACGATGGTAGGCAGGACAATGATCGAATTGAAGCCA
TCCTCGAAGCAAAGATATGTATACCCTCAAGCAACAGTGATGAAGATTAC
GACATTCTGATAGCCGATATCGCAATTGGACCATATGTATCTCCCGAAGA
ACGGGAGAATCATTCTCCCACTTCGCAACGCGTAGATTTTCCTCTGTCAA
AGGCAGCACCATTCGTCGTAATTGAAATTACGAGTTCTAACAGAATTACG
GATATTACAACGAAGAGAATTGCGTATGCCTTGCGTGGTATCCAAGAGTA
CGTGATTGTAGACTGTGAGAATGACAAAGTGATTGTGTTGAAGTTAAGTG
CAGACCCTCGAGACTGGCAAGGCCGCGCAGTTCGCAAGTCAAGTCGTCTG
AGTAAGAAGTTTTTTTATAATTCCGAACGTGTCTATGAAGGAAACGAGAA
AGTTGAAGCCTCCTTTTTGCGTGAAATTGATATAACTGCTGCAGAAATGG
TCACCCATGCAAGACCTGCTTCCGATATTTGCTTATCTCCTTTGCGCAAG
GAGCGGGCTAGGGCAAAAGAAGCGGAAACGAGAGCGACTGAGGCTACAAT
GAGAGCGACCGAGGCTGTAATGAGAGCGACTGAGGCTGAAAAGAGTGCGA
TTGAAAGGGCAGAAGCAGCCGAGAAGAACTTTGAGGCCGTATCCAAGTTA
CTCATTTCACTGGGTCATGGAGATAAAATTGTGAAACCAAGTGAAGTTTG
A

Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+

>Gcaud2220.t1 ID=Gcaud2220.t1|Name=Gcaud2220.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1224bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:22277..23627+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTGCGTTCCCCAATGCAGATACAACAAAAGTTCTCTACCCAACT
ATCTCGTCGCGAAAGTCACGATGCTCCAAATGACACACTCGTGCGACAGA
CGCACCAGCGACTGCCAGCAACATATCCGGCAGGCGTGACCGCAAGCGGA
CCACTGCTTCCTGCTACGAAACGAGTGTCCAAGCAATTTGGAATTCAATT
TGAGTTACCAGAAGGCCCGTCCTTGCGTGCTCTGCCAATGAACGCGAACT
CATCGTCAACTTTGGGGGTCTCACAATCTCCGTTACTTTCACAAGCAAAA
CTCAAGTCAAATCTTCGTCCAGGAGCACTTAATTTAACTCCGTGTACTCT
TGATGAATATTTTCAGCTGCCGGACGAAGCGGATAACAGATACCAACTGA
TTGACGGGATACTATCGCACCGTCAAATGGCATCTCCTCGTCACAAAGTA
ACACAGTTGTCACTTGCAACCCGTTTTAACTTTCTAAACGATGGTAGGCA
GGACAATGATCGAATTGAAGCCATCCTCGAAGCAAAGATATGTATACCCT
CAAGCAACAGTGATGAAGATTACGACATTCTGATAGCCGATATCGCAATT
GGACCATATGTATCTCCCGAAGAACGGGAGAATCATTCTCCCACTTCGCA
ACGCGTAGATTTTCCTCTGTCAAAGGCAGCACCATTCGTCGTAATTGAAA
TTACGAGTTCTAACAGAATTACGGATATTACAACGAAGAGAATTGCGTAT
GCCTTGCGTGGTATCCAAGAGTACGTGATTGTAGACTGTGAGAATGACAA
AGTGATTGTGTTGAAGTTAAGTGCAGACCCTCGAGACTGGCAAGGCCGCG
CAGTTCGCAAGTCAAGTCGTCTGAGTAAGAAGTTTTTTTATAATTCCGAA
CGTGTCTATGAAGGAAACGAGAAAGTTGAAGCCTCCTTTTTGCGTGAAAT
TGATATAACTGCTGCAGAAATGGTCACCCATGCAAGACCTGCTTCCGATA
TTTGCTTATCTCCTTTGCGCAAGGAGCGGGCTAGGGCAAAAGAAGCGGAA
ACGAGAGCGACTGAGGCTACAATGAGAGCGACCGAGGCTGTAATGAGAGC
GACTGAGGCTGAAAAGAGTGCGATTGAAAGGGCAGAAGCAGCCGAGAAGA
ACTTTGAGGCCGTATCCAAGTTACTCATTTCACTGGGTCATGGAGATAAA
ATTGTGAAACCAAGTGAAGTTTGA