Gcaud840.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud840.t1
Unique NameGcaud840.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_490_length_23884_cov_4.522254contigNODE_490_length_23884_cov_4.522254:22071..22741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud840Gcaud840Gracilaria caudata M_176_S67 malegeneNODE_490_length_23884_cov_4.522254 22071..22741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1Gcaud840.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_490_length_23884_cov_4.522254 22071..22741 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1.start1Gcaud840.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_490_length_23884_cov_4.522254 22071..22073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1.CDS1Gcaud840.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 22071..22172 +
Gcaud840.t1.CDS2Gcaud840.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 22248..22314 +
Gcaud840.t1.CDS3Gcaud840.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 22398..22493 +
Gcaud840.t1.CDS4Gcaud840.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_490_length_23884_cov_4.522254 22626..22741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1.exon1Gcaud840.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 22071..22172 +
Gcaud840.t1.exon2Gcaud840.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 22248..22314 +
Gcaud840.t1.exon3Gcaud840.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 22398..22493 +
Gcaud840.t1.exon4Gcaud840.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_490_length_23884_cov_4.522254 22626..22741 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1.intron1Gcaud840.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_490_length_23884_cov_4.522254 22173..22247 +
Gcaud840.t1.intron2Gcaud840.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_490_length_23884_cov_4.522254 22315..22397 +
Gcaud840.t1.intron3Gcaud840.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_490_length_23884_cov_4.522254 22494..22625 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud840.t1.stop1Gcaud840.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_490_length_23884_cov_4.522254 22739..22741 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud840.t1 ID=Gcaud840.t1|Name=Gcaud840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=127bp
MNSKDAANEEPRSALNALIRSAHAFLDRAVEGAKKHSPLNEQKLQAADDA
VAGVIHKAYHAVKRIAVNGNPVVILSSAAVLGAAPSLPFGPRAIIRNAGL
AVAMASVMIYPDHIRSYFAAAPDKKE*
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spliced messenger RNA

>Gcaud840.t1 ID=Gcaud840.t1|Name=Gcaud840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22071..22741+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCGAAGGACGCAGCCAACGAGGAGCCGCGCTCAGCTCTGAATGC
GCTCATTCGCAGCGCGCACGCCTTTCTAGATCGCGCCGTAGAAGGAGCAA
AGAAACATTCGCCGCTCAACGAACAAAAACTGCAAGCCGCGGACGACGCC
GTAGCGGGTGTCATTCACAAGGCGTATCACGCCGTGAAGCGAATCGCGGT
GAACGGCAATCCCGTGGTGATTCTCAGCTCGGCGGCCGTGTTGGGCGCCG
CGCCATCTCTGCCGTTCGGGCCGCGAGCCATCATTCGCAATGCGGGGTTG
GCGGTGGCAATGGCGTCGGTGATGATTTACCCGGATCATATCAGATCGTA
CTTTGCTGCAGCGCCGGACAAGAAGGAATGA
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protein sequence of Gcaud840.t1

>Gcaud840.t1 ID=Gcaud840.t1|Name=Gcaud840.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=127bp
MNSKDAANEEPRSALNALIRSAHAFLDRAVEGAKKHSPLNEQKLQAADDA
VAGVIHKAYHAVKRIAVNGNPVVILSSAAVLGAAPSLPFGPRAIIRNAGL
AVAMASVMIYPDHIRSYFAAAPDKKE*
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mRNA from alignment at NODE_490_length_23884_cov_4.522254:22071..22741+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud840.t1 ID=Gcaud840.t1|Name=Gcaud840.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=671bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22071..22741+ (Gracilaria caudata M_176_S67 male)
ATGAACTCGAAGGACGCAGCCAACGAGGAGCCGCGCTCAGCTCTGAATGC
GCTCATTCGCAGCGCGCACGCCTTTCTAGATCGCGCCGTAGAAGGAGCAA
AGGTACGCCGCGCAGCCGCCAAAAACGACGCGCTAACGCAACAAAGAAGC
TAACGCCTGTTCATGGCTTTCATATAGAAACATTCGCCGCTCAACGAACA
AAAACTGCAAGCCGCGGACGACGCCGTAGCGGGTGTCATTCACAGTACGC
ATTTCTCAATTCCGTTGCGCGCGCAAAATGGTAGACTCTGACCGCGCACT
CACGTATGCGAATTTCGGTTGTGACAGAGGCGTATCACGCCGTGAAGCGA
ATCGCGGTGAACGGCAATCCCGTGGTGATTCTCAGCTCGGCGGCCGTGTT
GGGCGCCGCGCCATCTCTGCCGTGTACGTGATGCGTGTGCCACAAGCCGT
TGCAAACAAAACAGCGTTGCAAACAAAACAGCGTTGCGAACCACGACGGT
AGCTGACAtgtgtgtgtgtgtgtgtttgCTTTTCGGTTGCGTTTTGGGGC
GTCAGTCGGGCCGCGAGCCATCATTCGCAATGCGGGGTTGGCGGTGGCAA
TGGCGTCGGTGATGATTTACCCGGATCATATCAGATCGTACTTTGCTGCA
GCGCCGGACAAGAAGGAATGA
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Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:22071..22741+

>Gcaud840.t1 ID=Gcaud840.t1|Name=Gcaud840.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=381bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:22071..22741+ (Gracilaria caudata M_176_S67 male)
ATGAACTCGAAGGACGCAGCCAACGAGGAGCCGCGCTCAGCTCTGAATGC
GCTCATTCGCAGCGCGCACGCCTTTCTAGATCGCGCCGTAGAAGGAGCAA
AGAAACATTCGCCGCTCAACGAACAAAAACTGCAAGCCGCGGACGACGCC
GTAGCGGGTGTCATTCACAAGGCGTATCACGCCGTGAAGCGAATCGCGGT
GAACGGCAATCCCGTGGTGATTCTCAGCTCGGCGGCCGTGTTGGGCGCCG
CGCCATCTCTGCCGTTCGGGCCGCGAGCCATCATTCGCAATGCGGGGTTG
GCGGTGGCAATGGCGTCGGTGATGATTTACCCGGATCATATCAGATCGTA
CTTTGCTGCAGCGCCGGACAAGAAGGAATGA
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