Gcaud2349.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2349.t1
Unique Name	Gcaud2349.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:37402..39351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT489CT
PFAMs	Radical_SAM,Rotamase_3,TRAM,UPF0004
Max annot lvl	2759\|Eukaryota
Evalue	9.11e-181
EggNOG OGs	COG0621@1\|root,KOG2492@2759\|Eukaryota
Description	N6-isopentenyladenosine methylthiotransferase activity
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2349	Gcaud2349	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 37402..39351 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2349.t1.start1	Gcaud2349.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 37402..37404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2349.t1.CDS1	Gcaud2349.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 37402..39351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2349.t1.exon1	Gcaud2349.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 37402..39351 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2349.t1.stop1	Gcaud2349.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 39349..39351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2349.t1	Gcaud2349.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 37402..39351 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+

mRNA sequence

>Gcaud2349.t1 ID=Gcaud2349.t1|Name=Gcaud2349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=650bp
MHSKGAFVPVGFYRQSESWLSSKLSYSPQICSQRIRNVTSAVLDHPKAKS
QTRRPLAPGAPGHRFYEFSPDDIEAIRIRHCRLESKELCDFVWEQVTHQK
ARLEDLAASLSTCTASKEHGGDLGWWWKDEVVPQSTDEFGINDQLLAVAL
RTRPNKVERVETKNGWHVFVVEEARHVLRTKRERTVSRKNPNRTKEAGSL
TEVPAPLPFTYAIQTLGCQMNRSDSERMAGVLNRLGYLETSDPFRASVLV
LNTCNIREHAESKVYSYLGRHVIRKRKYPTEVTLCVAGCVAQQEGEKMLR
RIPELDLVFGPQYANRLGDLLSDVERNGCQIAATDPIHIQEDISKPKRES
TVTAWVNVIYGCGENCSFCTVGNVVRPVEQSRAMDAIRAEIEEAAKDGIR
EVVLLGQNIDAYGRDMYPRRTFAELLTFVHDVEGIERIRFTTSHPRYISS
NLVNVCATLPKIMPYFHIPPQSGDNTILKEMRRGYTAEAYETIVNRIRER
IPDAGICGDMIVGFPGETEEQFQRSLDLMDRIKFDGMNTAAYSPRPQTPA
AVMKNQVPDAVKSDRLHRMNELVKDHALERSLRYVGRIEHVLVEEKNPKD
AQQVMGRTPANRRVYFEGSIAELKGKIVPVKIEHAYPFSLKGKKVGLAY*

spliced messenger RNA

>Gcaud2349.t1 ID=Gcaud2349.t1|Name=Gcaud2349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAGCAAGGGAGCGTTTGTGCCGGTTGGTTTTTATAGACAGTCTGA
GAGCTGGTTGTCCTCTAAGTTATCATACTCGCCACAGATATGTAGTCAGC
GCATAAGAAACGTCACTAGCGCTGTTCTGGATCATCCAAAAGCAAAAAGC
CAAACGCGAAGACCTCTTGCTCCAGGGGCGCCCGGTCATAGATTTTACGA
ATTCTCGCCGGACGACATTGAAGCGATTCGAATTCGCCATTGCCGCCTTG
AAAGCAAGGAGCTCTGTGATTTTGTTTGGGAACAGGTTACTCATCAAAAA
GCGCGTTTGGAAGATTTGGCTGCTTCACTCTCCACCTGTACTGCATCGAA
AGAGCATGGTGGGGATTTAGGTTGGTGGTGGAAGGATGAGGTCGTCCCTC
AGAGTACCGATGAATTCGGTATAAACGATCAGCTTCTCGCGGTCGCTCTT
CGAACTCGTCCAAACAAAGTAGAAAGAGTTGAAACCAAGAACGGTTGGCA
TGTTTTTGTCGTAGAAGAAGCTCGTCATGTTCTCCGAACCAAGCGTGAGA
GAACGGTTTCAAGGAAAAATCCAAATCGCACCAAAGAGGCAGGCTCTCTG
ACTGAGGTTCCAGCGCCTCTGCCATTCACATACGCTATTCAGACTCTCGG
ATGCCAAATGAACCGGTCTGATTCGGAACGGATGGCTGGTGTACTGAATC
GCCTTGGATATTTAGAGACAAGCGATCCCTTTCGAGCTTCTGTTCTAGTT
CTCAACACATGCAACATCCGAGAACATGCCGAAAGCAAAGTTTACAGCTA
CCTAGGGCGACACGTGATAAGAAAGAGGAAATATCCGACTGAAGTTACAC
TCTGCGTCGCGGGATGTGTGGCTCAACAAGAAGGAGAAAAAATGCTTCGT
CGAATCCCAGAACTCGATCTCGTTTTCGGCCCCCAGTATGCAAACAGATT
AGGGGATCTGCTGTCTGATGTGGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCCATTCACATCCAAGAAGACATATCAAAACCTAAGCGTGAGTCT
ACTGTAACTGCTTGGGTCAACGTGATCTATGGATGTGGTGAAAATTGCTC
TTTTTGTACTGTAGGGAACGTGGTTCGCCCAGTTGAACAAAGCCGTGCCA
TGGATGCCATTCGAGCTGAAATTGAAGAAGCTGCAAAGGATGGGATTCGA
GAGGTTGTACTGTTAGGCCAGAATATTGACGCATACGGCCGTGATATGTA
CCCGAGGAGAACCTTCGCGGAACTTTTGACTTTCGTTCATGACGTAGAGG
GCATCGAGAGAATTCGGTTCACCACAAGTCATCCACGCTACATATCCTCG
AACCTTGTCAATGTTTGCGCAACTTTACCGAAGATCATGCCCTATTTCCA
TATTCCCCCACAAAGTGGGGACAATACTATCCTGAAGGAAATGCGTAGAG
GGTACACAGCAGAAGCATACGAGACTATCGTAAATCGCATACGGGAGCGC
ATTCCAGATGCCGGAATCTGTGGGGATATGATCGTAGGATTTCCGGGTGA
AACAGAAGAGCAATTCCAAAGGTCTCTGGACCTCATGGACAGGATTAAGT
TTGACGGGATGAATACTGCGGCCTATTCGCCGCGACCGCAGACACCTGCG
GCGGTTATGAAGAATCAAGTTCCTGATGCAGTGAAAAGCGATAGATTGCA
CCGAATGAACGAGCTAGTCAAAGACCACGCACTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAGCACGTGCTTGTCGAAGAAAAAAACCCAAAAGAC
GCCCAACAGGTCATGGGAAGAACCCCTGCTAATCGCCGCGTTTATTTCGA
AGGTTCTATCGCGGAATTGAAGGGGAAGATCGTTCCTGTCAAGATTGAGC
ATGCTTATCCATTTAGTTTGAAAGGTAAGAAAGTAGGGCTTGCATACTAA

protein sequence of Gcaud2349.t1

>Gcaud2349.t1 ID=Gcaud2349.t1|Name=Gcaud2349.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=650bp
MHSKGAFVPVGFYRQSESWLSSKLSYSPQICSQRIRNVTSAVLDHPKAKS
QTRRPLAPGAPGHRFYEFSPDDIEAIRIRHCRLESKELCDFVWEQVTHQK
ARLEDLAASLSTCTASKEHGGDLGWWWKDEVVPQSTDEFGINDQLLAVAL
RTRPNKVERVETKNGWHVFVVEEARHVLRTKRERTVSRKNPNRTKEAGSL
TEVPAPLPFTYAIQTLGCQMNRSDSERMAGVLNRLGYLETSDPFRASVLV
LNTCNIREHAESKVYSYLGRHVIRKRKYPTEVTLCVAGCVAQQEGEKMLR
RIPELDLVFGPQYANRLGDLLSDVERNGCQIAATDPIHIQEDISKPKRES
TVTAWVNVIYGCGENCSFCTVGNVVRPVEQSRAMDAIRAEIEEAAKDGIR
EVVLLGQNIDAYGRDMYPRRTFAELLTFVHDVEGIERIRFTTSHPRYISS
NLVNVCATLPKIMPYFHIPPQSGDNTILKEMRRGYTAEAYETIVNRIRER
IPDAGICGDMIVGFPGETEEQFQRSLDLMDRIKFDGMNTAAYSPRPQTPA
AVMKNQVPDAVKSDRLHRMNELVKDHALERSLRYVGRIEHVLVEEKNPKD
AQQVMGRTPANRRVYFEGSIAELKGKIVPVKIEHAYPFSLKGKKVGLAY*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2349.t1 ID=Gcaud2349.t1|Name=Gcaud2349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+ (Gracilaria caudata M_176_S67 male)
ATGCATAGCAAGGGAGCGTTTGTGCCGGTTGGTTTTTATAGACAGTCTGA
GAGCTGGTTGTCCTCTAAGTTATCATACTCGCCACAGATATGTAGTCAGC
GCATAAGAAACGTCACTAGCGCTGTTCTGGATCATCCAAAAGCAAAAAGC
CAAACGCGAAGACCTCTTGCTCCAGGGGCGCCCGGTCATAGATTTTACGA
ATTCTCGCCGGACGACATTGAAGCGATTCGAATTCGCCATTGCCGCCTTG
AAAGCAAGGAGCTCTGTGATTTTGTTTGGGAACAGGTTACTCATCAAAAA
GCGCGTTTGGAAGATTTGGCTGCTTCACTCTCCACCTGTACTGCATCGAA
AGAGCATGGTGGGGATTTAGGTTGGTGGTGGAAGGATGAGGTCGTCCCTC
AGAGTACCGATGAATTCGGTATAAACGATCAGCTTCTCGCGGTCGCTCTT
CGAACTCGTCCAAACAAAGTAGAAAGAGTTGAAACCAAGAACGGTTGGCA
TGTTTTTGTCGTAGAAGAAGCTCGTCATGTTCTCCGAACCAAGCGTGAGA
GAACGGTTTCAAGGAAAAATCCAAATCGCACCAAAGAGGCAGGCTCTCTG
ACTGAGGTTCCAGCGCCTCTGCCATTCACATACGCTATTCAGACTCTCGG
ATGCCAAATGAACCGGTCTGATTCGGAACGGATGGCTGGTGTACTGAATC
GCCTTGGATATTTAGAGACAAGCGATCCCTTTCGAGCTTCTGTTCTAGTT
CTCAACACATGCAACATCCGAGAACATGCCGAAAGCAAAGTTTACAGCTA
CCTAGGGCGACACGTGATAAGAAAGAGGAAATATCCGACTGAAGTTACAC
TCTGCGTCGCGGGATGTGTGGCTCAACAAGAAGGAGAAAAAATGCTTCGT
CGAATCCCAGAACTCGATCTCGTTTTCGGCCCCCAGTATGCAAACAGATT
AGGGGATCTGCTGTCTGATGTGGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCCATTCACATCCAAGAAGACATATCAAAACCTAAGCGTGAGTCT
ACTGTAACTGCTTGGGTCAACGTGATCTATGGATGTGGTGAAAATTGCTC
TTTTTGTACTGTAGGGAACGTGGTTCGCCCAGTTGAACAAAGCCGTGCCA
TGGATGCCATTCGAGCTGAAATTGAAGAAGCTGCAAAGGATGGGATTCGA
GAGGTTGTACTGTTAGGCCAGAATATTGACGCATACGGCCGTGATATGTA
CCCGAGGAGAACCTTCGCGGAACTTTTGACTTTCGTTCATGACGTAGAGG
GCATCGAGAGAATTCGGTTCACCACAAGTCATCCACGCTACATATCCTCG
AACCTTGTCAATGTTTGCGCAACTTTACCGAAGATCATGCCCTATTTCCA
TATTCCCCCACAAAGTGGGGACAATACTATCCTGAAGGAAATGCGTAGAG
GGTACACAGCAGAAGCATACGAGACTATCGTAAATCGCATACGGGAGCGC
ATTCCAGATGCCGGAATCTGTGGGGATATGATCGTAGGATTTCCGGGTGA
AACAGAAGAGCAATTCCAAAGGTCTCTGGACCTCATGGACAGGATTAAGT
TTGACGGGATGAATACTGCGGCCTATTCGCCGCGACCGCAGACACCTGCG
GCGGTTATGAAGAATCAAGTTCCTGATGCAGTGAAAAGCGATAGATTGCA
CCGAATGAACGAGCTAGTCAAAGACCACGCACTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAGCACGTGCTTGTCGAAGAAAAAAACCCAAAAGAC
GCCCAACAGGTCATGGGAAGAACCCCTGCTAATCGCCGCGTTTATTTCGA
AGGTTCTATCGCGGAATTGAAGGGGAAGATCGTTCCTGTCAAGATTGAGC
ATGCTTATCCATTTAGTTTGAAAGGTAAGAAAGTAGGGCTTGCATACTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+

>Gcaud2349.t1 ID=Gcaud2349.t1|Name=Gcaud2349.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1950bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:37402..39351+ (Gracilaria caudata M_176_S67 male)
ATGCATAGCAAGGGAGCGTTTGTGCCGGTTGGTTTTTATAGACAGTCTGA
GAGCTGGTTGTCCTCTAAGTTATCATACTCGCCACAGATATGTAGTCAGC
GCATAAGAAACGTCACTAGCGCTGTTCTGGATCATCCAAAAGCAAAAAGC
CAAACGCGAAGACCTCTTGCTCCAGGGGCGCCCGGTCATAGATTTTACGA
ATTCTCGCCGGACGACATTGAAGCGATTCGAATTCGCCATTGCCGCCTTG
AAAGCAAGGAGCTCTGTGATTTTGTTTGGGAACAGGTTACTCATCAAAAA
GCGCGTTTGGAAGATTTGGCTGCTTCACTCTCCACCTGTACTGCATCGAA
AGAGCATGGTGGGGATTTAGGTTGGTGGTGGAAGGATGAGGTCGTCCCTC
AGAGTACCGATGAATTCGGTATAAACGATCAGCTTCTCGCGGTCGCTCTT
CGAACTCGTCCAAACAAAGTAGAAAGAGTTGAAACCAAGAACGGTTGGCA
TGTTTTTGTCGTAGAAGAAGCTCGTCATGTTCTCCGAACCAAGCGTGAGA
GAACGGTTTCAAGGAAAAATCCAAATCGCACCAAAGAGGCAGGCTCTCTG
ACTGAGGTTCCAGCGCCTCTGCCATTCACATACGCTATTCAGACTCTCGG
ATGCCAAATGAACCGGTCTGATTCGGAACGGATGGCTGGTGTACTGAATC
GCCTTGGATATTTAGAGACAAGCGATCCCTTTCGAGCTTCTGTTCTAGTT
CTCAACACATGCAACATCCGAGAACATGCCGAAAGCAAAGTTTACAGCTA
CCTAGGGCGACACGTGATAAGAAAGAGGAAATATCCGACTGAAGTTACAC
TCTGCGTCGCGGGATGTGTGGCTCAACAAGAAGGAGAAAAAATGCTTCGT
CGAATCCCAGAACTCGATCTCGTTTTCGGCCCCCAGTATGCAAACAGATT
AGGGGATCTGCTGTCTGATGTGGAAAGGAATGGGTGTCAAATTGCAGCAA
CTGATCCCATTCACATCCAAGAAGACATATCAAAACCTAAGCGTGAGTCT
ACTGTAACTGCTTGGGTCAACGTGATCTATGGATGTGGTGAAAATTGCTC
TTTTTGTACTGTAGGGAACGTGGTTCGCCCAGTTGAACAAAGCCGTGCCA
TGGATGCCATTCGAGCTGAAATTGAAGAAGCTGCAAAGGATGGGATTCGA
GAGGTTGTACTGTTAGGCCAGAATATTGACGCATACGGCCGTGATATGTA
CCCGAGGAGAACCTTCGCGGAACTTTTGACTTTCGTTCATGACGTAGAGG
GCATCGAGAGAATTCGGTTCACCACAAGTCATCCACGCTACATATCCTCG
AACCTTGTCAATGTTTGCGCAACTTTACCGAAGATCATGCCCTATTTCCA
TATTCCCCCACAAAGTGGGGACAATACTATCCTGAAGGAAATGCGTAGAG
GGTACACAGCAGAAGCATACGAGACTATCGTAAATCGCATACGGGAGCGC
ATTCCAGATGCCGGAATCTGTGGGGATATGATCGTAGGATTTCCGGGTGA
AACAGAAGAGCAATTCCAAAGGTCTCTGGACCTCATGGACAGGATTAAGT
TTGACGGGATGAATACTGCGGCCTATTCGCCGCGACCGCAGACACCTGCG
GCGGTTATGAAGAATCAAGTTCCTGATGCAGTGAAAAGCGATAGATTGCA
CCGAATGAACGAGCTAGTCAAAGACCACGCACTGGAGAGAAGCCTTCGAT
ATGTTGGGAGAATCGAGCACGTGCTTGTCGAAGAAAAAAACCCAAAAGAC
GCCCAACAGGTCATGGGAAGAACCCCTGCTAATCGCCGCGTTTATTTCGA
AGGTTCTATCGCGGAATTGAAGGGGAAGATCGTTCCTGTCAAGATTGAGC
ATGCTTATCCATTTAGTTTGAAAGGTAAGAAAGTAGGGCTTGCATACTAA