Gcaud7937.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7937.t1
Unique Name	Gcaud7937.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_471_length_24490_cov_4.556457	contig	NODE_471_length_24490_cov_4.556457:19420..20193 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7937	Gcaud7937	Gracilaria caudata M_176_S67 male	gene	NODE_471_length_24490_cov_4.556457 19420..20193 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7937.t1.stop1	Gcaud7937.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_471_length_24490_cov_4.556457 19420..19422 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7937.t1.CDS1	Gcaud7937.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_471_length_24490_cov_4.556457 19420..20193 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7937.t1.exon1	Gcaud7937.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_471_length_24490_cov_4.556457 19420..20193 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7937.t1.start1	Gcaud7937.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_471_length_24490_cov_4.556457 20191..20193 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7937.t1	Gcaud7937.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_471_length_24490_cov_4.556457 19420..20193 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_471_length_24490_cov_4.556457:19420..20193-
coding sequence from alignment at NODE_471_length_24490_cov_4.556457:19420..20193-

mRNA sequence

>Gcaud7937.t1 ID=Gcaud7937.t1|Name=Gcaud7937.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MLTTVRQDMMPVAVRQLTQPVLSPLPQRPSPSPSPNVQPQQPPASPLPVA
PVPPPVPAGGDGVPGVADFEVTSIPPLSECGGPLFRMQIVLLLELCFEIL
FLFLRCFAERDDDDDSSTSGTTDTNASIEMNMRAYILIRAIYTVPVLIVN
TSIYWIGGGPTGACLSNYSQLQVPFTHLIFYLLFCIIIIIMGLIRIDEWD
PSTTDTTYRSRTFRSDGPPTRTTSYFRYTRPARRHNTSTSYSEPKFRCNL
GCCAINI*

spliced messenger RNA

>Gcaud7937.t1 ID=Gcaud7937.t1|Name=Gcaud7937.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_471_length_24490_cov_4.556457:19420..20193- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACGACGGTGAGACAGGACATGATGCCAGTGGCAGTGAGACAGCT
TACGCAGCCGGTGCTGTCGCCGTTGCCACAAAGACCGTCGCCGTCTCCGT
CGCCGAATGTGCAGCCGCAGCAGCCGCCGGCTTCGCCGCTGCCGGTTGCG
CCCGTGCCGCCGCCCGTACCGGCGGGTGGTGACGGCGTGCCTGGCGTGGC
GGACTTTGAAGTGACGTCCATTCCACCGCTTTCGGAGTGTGGTGGGCCGT
TGTTTCGAATGCAGATTGTGTTGTTGTTGGAGCTGTGCTTCGAGATTTTG
TTCTTGTTTCTGAGATGCTTTGCGGAACGTGATGATGATGATGACTCCAG
TACGTCGGGTACTACCGACACCAATGCTTCCATTGAGATGAACATGCGCG
CTTACATCCTCATTCGCGCCATCTATACGGTTCCGGTTCTGATTGTGAAT
ACGAGCATCTATTGGATCGGAGGTGGACCTACTGGAGCGTGTCTGTCAAA
CTATTCGCAGCTGCAGGTGCCGTTCACGCATCTCATATTCTACCTGCTCT
TTTGTATCATCATCATCATTATGGGGCTCATTCGCATTGATGAGTGGGAT
CCGAGCACCACTGACACAACGTATCGTTCTCGCACGTTCCGTTCCGACGG
ACCTCCAACTCGCACCACGAGTTACTTCCGATACACCAGGCCGGCCAGAC
GCCACAACACCTCCACAAGTTACTCGGAACCCAAGTTTCGATGTAACCTA
GGATGCTGTGCCATCAATATCTAG

protein sequence of Gcaud7937.t1

>Gcaud7937.t1 ID=Gcaud7937.t1|Name=Gcaud7937.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MLTTVRQDMMPVAVRQLTQPVLSPLPQRPSPSPSPNVQPQQPPASPLPVA
PVPPPVPAGGDGVPGVADFEVTSIPPLSECGGPLFRMQIVLLLELCFEIL
FLFLRCFAERDDDDDSSTSGTTDTNASIEMNMRAYILIRAIYTVPVLIVN
TSIYWIGGGPTGACLSNYSQLQVPFTHLIFYLLFCIIIIIMGLIRIDEWD
PSTTDTTYRSRTFRSDGPPTRTTSYFRYTRPARRHNTSTSYSEPKFRCNL
GCCAINI*

mRNA from alignment at NODE_471_length_24490_cov_4.556457:19420..20193-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7937.t1 ID=Gcaud7937.t1|Name=Gcaud7937.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_471_length_24490_cov_4.556457:19420..20193- (Gracilaria caudata M_176_S67 male)
ATGTTGACGACGGTGAGACAGGACATGATGCCAGTGGCAGTGAGACAGCT
TACGCAGCCGGTGCTGTCGCCGTTGCCACAAAGACCGTCGCCGTCTCCGT
CGCCGAATGTGCAGCCGCAGCAGCCGCCGGCTTCGCCGCTGCCGGTTGCG
CCCGTGCCGCCGCCCGTACCGGCGGGTGGTGACGGCGTGCCTGGCGTGGC
GGACTTTGAAGTGACGTCCATTCCACCGCTTTCGGAGTGTGGTGGGCCGT
TGTTTCGAATGCAGATTGTGTTGTTGTTGGAGCTGTGCTTCGAGATTTTG
TTCTTGTTTCTGAGATGCTTTGCGGAACGTGATGATGATGATGACTCCAG
TACGTCGGGTACTACCGACACCAATGCTTCCATTGAGATGAACATGCGCG
CTTACATCCTCATTCGCGCCATCTATACGGTTCCGGTTCTGATTGTGAAT
ACGAGCATCTATTGGATCGGAGGTGGACCTACTGGAGCGTGTCTGTCAAA
CTATTCGCAGCTGCAGGTGCCGTTCACGCATCTCATATTCTACCTGCTCT
TTTGTATCATCATCATCATTATGGGGCTCATTCGCATTGATGAGTGGGAT
CCGAGCACCACTGACACAACGTATCGTTCTCGCACGTTCCGTTCCGACGG
ACCTCCAACTCGCACCACGAGTTACTTCCGATACACCAGGCCGGCCAGAC
GCCACAACACCTCCACAAGTTACTCGGAACCCAAGTTTCGATGTAACCTA
GGATGCTGTGCCATCAATATCTAG

Coding sequence (CDS) from alignment at NODE_471_length_24490_cov_4.556457:19420..20193-

>Gcaud7937.t1 ID=Gcaud7937.t1|Name=Gcaud7937.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_471_length_24490_cov_4.556457:19420..20193- (Gracilaria caudata M_176_S67 male)
ATGTTGACGACGGTGAGACAGGACATGATGCCAGTGGCAGTGAGACAGCT
TACGCAGCCGGTGCTGTCGCCGTTGCCACAAAGACCGTCGCCGTCTCCGT
CGCCGAATGTGCAGCCGCAGCAGCCGCCGGCTTCGCCGCTGCCGGTTGCG
CCCGTGCCGCCGCCCGTACCGGCGGGTGGTGACGGCGTGCCTGGCGTGGC
GGACTTTGAAGTGACGTCCATTCCACCGCTTTCGGAGTGTGGTGGGCCGT
TGTTTCGAATGCAGATTGTGTTGTTGTTGGAGCTGTGCTTCGAGATTTTG
TTCTTGTTTCTGAGATGCTTTGCGGAACGTGATGATGATGATGACTCCAG
TACGTCGGGTACTACCGACACCAATGCTTCCATTGAGATGAACATGCGCG
CTTACATCCTCATTCGCGCCATCTATACGGTTCCGGTTCTGATTGTGAAT
ACGAGCATCTATTGGATCGGAGGTGGACCTACTGGAGCGTGTCTGTCAAA
CTATTCGCAGCTGCAGGTGCCGTTCACGCATCTCATATTCTACCTGCTCT
TTTGTATCATCATCATCATTATGGGGCTCATTCGCATTGATGAGTGGGAT
CCGAGCACCACTGACACAACGTATCGTTCTCGCACGTTCCGTTCCGACGG
ACCTCCAACTCGCACCACGAGTTACTTCCGATACACCAGGCCGGCCAGAC
GCCACAACACCTCCACAAGTTACTCGGAACCCAAGTTTCGATGTAACCTA
GGATGCTGTGCCATCAATATCTAG