Gcaud2580.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2580.t1
Unique NameGcaud2580.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length469
Homology
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BLAST of Gcaud2580.t1 vs. uniprot
Match: A0A2V3ISX8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISX8_9FLOR)

HSP 1 Score: 395 bits (1015), Expect = 6.550e-131
Identity = 211/452 (46.68%), Postives = 291/452 (64.38%), Query Frame = 0 
Query:    1 MIRNNKLYYSAVEAPWYSFEISRTSLSSIVTSVLITLIAYQTAAILFDTVLGLEKRHQAKLKHLAVVILTRYLSSPLAILNSLIRKDWLTRLYYGGDIPKDTAISRDPERVKVKTVLXXXXXXXXXXXXXXXXXXXXXXXXXXLDLDQAGFGAVRFGVSDPADALETTPYLSLCRTVSFEERSSDVLQASFRLCESPILPEDENPNVTGIEITMEQDYSVTTRVIFQGLVMLGVKWARLQAEEGNFWVRGGLTENSSALLVQTALEQFSEYCGETNVLGPVPAKRNEQFNSGKRLIESVGIECENVSTTRELKNQITTNITIALRQRMTLVSSDQLLLRNESDPSSDFTEQRNIILLKRTEKNASLFALIVAAVLLLISRLIVRTILANDVEEGLQQFIKDQLPVPRQTSLLRAGGEKLSFRVKYQVGEVGYYGMVQEGLPETDRFEGGVVG 452
            MIRNNKL Y++VE  WY F+IS+TSLSS+VTSVL+TLI+YQ A+ILF   LG++KRH+ KLK+  +V+LTRYLSSPLA+LNS++R DWLTRLYY GDIP+DT ISRDP  V V+T                            L  ++AGF  V  GV    + +ET PY+SLC    FEER  D+++ +F+LCESP LPED   NVTG+EI++E    V  RVI QG V+L  K+A++   +    V   +T  S A LV  AL+ F+++CGE N LGP+P K+N+ F + K L+ SV + C NV+ + E +    T I  +L++++T + ++  L+RN SD  S+F E +N +LL+RTE+N+S+F LIV AV+LL+ R  + TI ANDVE+GL+  I D+L    + + +    E++ FR KYQ GE    G+  E   E + F GGVVG
Sbjct:    1 MIRNNKLSYASVEREWYLFDISQTSLSSLVTSVLVTLISYQVASILFTITLGMKKRHETKLKNFGIVLLTRYLSSPLAVLNSILRVDWLTRLYYRGDIPRDTHISRDPASVHVRTASVLFLLVIAPPMIDTMLVALSLSRTNELTFEEAGFRGVLLGVDRGLNVVETIPYVSLCNLAKFEERPEDLVRVAFQLCESPSLPEDAPENVTGVEISLENQVQVVVRVILQGYVLLSQKYAQVNGNDVEMHVMAAVTNRSVAPLVDIALDGFAKHCGERNTLGPLPPKQNDVFGTNKVLLASVRVACGNVTISEEERRTHATQIVESLKEKVTFIEAESTLVRNASDLGSNFVENKNDVLLQRTERNSSMFMLIVVAVILLLVRATLGTIFANDVEKGLEVLILDRLGCGERHTTMWKDVERVRFRKKYQYGERCQLGLELEETAEVESFRGGVVG 452
The following BLAST results are available for this feature:
BLAST of Gcaud2580.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISX8_9FLOR6.550e-13146.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 364..383
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..137
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 384..468
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..363
NoneNo IPR availableTMHMMTMhelixcoord: 364..383
NoneNo IPR availableTMHMMTMhelixcoord: 67..84
NoneNo IPR availableTMHMMTMhelixcoord: 116..138
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_427_length_25918_cov_4.599721contigNODE_427_length_25918_cov_4.599721:20460..21866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2580.t1Gcaud2580.t1Gracilaria caudata M_176_S67 malemRNANODE_427_length_25918_cov_4.599721 20460..21866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=469bp
MIRNNKLYYSAVEAPWYSFEISRTSLSSIVTSVLITLIAYQTAAILFDTV
LGLEKRHQAKLKHLAVVILTRYLSSPLAILNSLIRKDWLTRLYYGGDIPK
DTAISRDPERVKVKTVLVVLLLVTATPLIDVVLLALAMSRTQTLDLDQAG
FGAVRFGVSDPADALETTPYLSLCRTVSFEERSSDVLQASFRLCESPILP
EDENPNVTGIEITMEQDYSVTTRVIFQGLVMLGVKWARLQAEEGNFWVRG
GLTENSSALLVQTALEQFSEYCGETNVLGPVPAKRNEQFNSGKRLIESVG
IECENVSTTRELKNQITTNITIALRQRMTLVSSDQLLLRNESDPSSDFTE
QRNIILLKRTEKNASLFALIVAAVLLLISRLIVRTILANDVEEGLQQFIK
DQLPVPRQTSLLRAGGEKLSFRVKYQVGEVGYYGMVQEGLPETDRFEGGV
VGSDDMRNWRDFAPQARC*
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