Gcaud2580.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2580.t1
Unique Name	Gcaud2580.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:20460..21866 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2580	Gcaud2580	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 20460..21866 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2580.t1.stop1	Gcaud2580.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 20460..20462 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2580.t1.CDS1	Gcaud2580.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 20460..21866 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2580.t1.exon1	Gcaud2580.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 20460..21866 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2580.t1.start1	Gcaud2580.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 21864..21866 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2580.t1	Gcaud2580.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 20460..21866 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:20460..21866-
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:20460..21866-

mRNA sequence

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=469bp
MIRNNKLYYSAVEAPWYSFEISRTSLSSIVTSVLITLIAYQTAAILFDTV
LGLEKRHQAKLKHLAVVILTRYLSSPLAILNSLIRKDWLTRLYYGGDIPK
DTAISRDPERVKVKTVLVVLLLVTATPLIDVVLLALAMSRTQTLDLDQAG
FGAVRFGVSDPADALETTPYLSLCRTVSFEERSSDVLQASFRLCESPILP
EDENPNVTGIEITMEQDYSVTTRVIFQGLVMLGVKWARLQAEEGNFWVRG
GLTENSSALLVQTALEQFSEYCGETNVLGPVPAKRNEQFNSGKRLIESVG
IECENVSTTRELKNQITTNITIALRQRMTLVSSDQLLLRNESDPSSDFTE
QRNIILLKRTEKNASLFALIVAAVLLLISRLIVRTILANDVEEGLQQFIK
DQLPVPRQTSLLRAGGEKLSFRVKYQVGEVGYYGMVQEGLPETDRFEGGV
VGSDDMRNWRDFAPQARC*

spliced messenger RNA

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:20460..21866- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGAAACAATAAGCTCTACTATTCAGCGGTTGAAGCTCCATGGTA
TTCCTTCGAAATCTCTCGCACATCCTTGAGCTCTATTGTTACCTCAGTGT
TAATCACTTTGATTGCTTACCAGACGGCAGCTATTCTTTTTGACACTGTT
CTCGGCTTGGAAAAGCGCCACCAAGCTAAACTGAAACACCTAGCCGTTGT
CATCCTCACGAGGTACCTGTCTTCTCCACTAGCTATCTTGAATAGTCTAA
TAAGGAAAGATTGGCTCACGCGTCTTTACTATGGGGGCGATATTCCTAAG
GACACCGCCATATCCCGAGATCCGGAACGTGTGAAAGTCAAGACAGTTCT
CGTCGTTCTGCTTCTTGTAACTGCCACGCCCCTGATCGATGTTGTTCTTT
TGGCTCTTGCCATGTCCAGAACACAAACTTTAGACCTTGATCAGGCAGGA
TTTGGAGCTGTGCGCTTTGGCGTGAGTGACCCTGCTGATGCCCTCGAAAC
AACCCCGTATCTGTCACTTTGCCGAACAGTCTCGTTTGAGGAGAGAAGCA
GCGATGTACTGCAGGCTTCCTTTCGACTGTGCGAAAGTCCAATCTTGCCG
GAGGATGAAAATCCGAATGTTACTGGCATAGAAATTACGATGGAACAAGA
CTATTCGGTGACTACGAGAGTTATATTCCAGGGTTTGGTAATGTTGGGAG
TGAAGTGGGCACGCCTTCAGGCCGAGGAAGGTAACTTTTGGGTGAGGGGA
GGTCTGACAGAAAACTCCTCTGCTCTCCTTGTGCAAACTGCTCTTGAACA
GTTTTCCGAATACTGTGGGGAAACGAACGTTCTTGGTCCTGTACCAGCAA
AGAGGAATGAGCAATTTAACTCAGGGAAACGGTTGATTGAATCAGTTGGA
ATCGAATGCGAAAATGTATCAACGACGCGTGAATTGAAGAATCAGATCAC
TACGAACATTACAATTGCTTTGAGACAGAGAATGACATTAGTGAGTTCAG
ACCAGCTGTTGTTGCGAAATGAGTCAGACCCGAGCAGCGATTTCACTGAA
CAGAGGAATATCATCCTTCTGAAAAGGACAGAGAAAAATGCGTCTTTGTT
TGCTCTGATTGTTGCTGCTGTGTTACTTCTGATCTCTCGACTAATTGTAC
GAACAATTCTTGCAAACGATGTGGAAGAAGGACTACAGCAGTTCATCAAG
GATCAGCTCCCAGTTCCGCGACAGACATCGCTGTTACGAGCTGGTGGGGA
AAAGCTATCTTTTCGAGTGAAATATCAGGTCGGGGAAGTCGGGTATTATG
GTATGGTGCAAGAAGGTTTGCCTGAGACAGACAGGTTTGAAGGTGGTGTT
GTAGGAAGCGATGATATGAGGAATTGGAGGGATTTTGCACCTCAAGCGCG
TTGCTAG

protein sequence of Gcaud2580.t1

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=469bp
MIRNNKLYYSAVEAPWYSFEISRTSLSSIVTSVLITLIAYQTAAILFDTV
LGLEKRHQAKLKHLAVVILTRYLSSPLAILNSLIRKDWLTRLYYGGDIPK
DTAISRDPERVKVKTVLVVLLLVTATPLIDVVLLALAMSRTQTLDLDQAG
FGAVRFGVSDPADALETTPYLSLCRTVSFEERSSDVLQASFRLCESPILP
EDENPNVTGIEITMEQDYSVTTRVIFQGLVMLGVKWARLQAEEGNFWVRG
GLTENSSALLVQTALEQFSEYCGETNVLGPVPAKRNEQFNSGKRLIESVG
IECENVSTTRELKNQITTNITIALRQRMTLVSSDQLLLRNESDPSSDFTE
QRNIILLKRTEKNASLFALIVAAVLLLISRLIVRTILANDVEEGLQQFIK
DQLPVPRQTSLLRAGGEKLSFRVKYQVGEVGYYGMVQEGLPETDRFEGGV
VGSDDMRNWRDFAPQARC*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:20460..21866-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:20460..21866- (Gracilaria caudata M_176_S67 male)
ATGATTCGAAACAATAAGCTCTACTATTCAGCGGTTGAAGCTCCATGGTA
TTCCTTCGAAATCTCTCGCACATCCTTGAGCTCTATTGTTACCTCAGTGT
TAATCACTTTGATTGCTTACCAGACGGCAGCTATTCTTTTTGACACTGTT
CTCGGCTTGGAAAAGCGCCACCAAGCTAAACTGAAACACCTAGCCGTTGT
CATCCTCACGAGGTACCTGTCTTCTCCACTAGCTATCTTGAATAGTCTAA
TAAGGAAAGATTGGCTCACGCGTCTTTACTATGGGGGCGATATTCCTAAG
GACACCGCCATATCCCGAGATCCGGAACGTGTGAAAGTCAAGACAGTTCT
CGTCGTTCTGCTTCTTGTAACTGCCACGCCCCTGATCGATGTTGTTCTTT
TGGCTCTTGCCATGTCCAGAACACAAACTTTAGACCTTGATCAGGCAGGA
TTTGGAGCTGTGCGCTTTGGCGTGAGTGACCCTGCTGATGCCCTCGAAAC
AACCCCGTATCTGTCACTTTGCCGAACAGTCTCGTTTGAGGAGAGAAGCA
GCGATGTACTGCAGGCTTCCTTTCGACTGTGCGAAAGTCCAATCTTGCCG
GAGGATGAAAATCCGAATGTTACTGGCATAGAAATTACGATGGAACAAGA
CTATTCGGTGACTACGAGAGTTATATTCCAGGGTTTGGTAATGTTGGGAG
TGAAGTGGGCACGCCTTCAGGCCGAGGAAGGTAACTTTTGGGTGAGGGGA
GGTCTGACAGAAAACTCCTCTGCTCTCCTTGTGCAAACTGCTCTTGAACA
GTTTTCCGAATACTGTGGGGAAACGAACGTTCTTGGTCCTGTACCAGCAA
AGAGGAATGAGCAATTTAACTCAGGGAAACGGTTGATTGAATCAGTTGGA
ATCGAATGCGAAAATGTATCAACGACGCGTGAATTGAAGAATCAGATCAC
TACGAACATTACAATTGCTTTGAGACAGAGAATGACATTAGTGAGTTCAG
ACCAGCTGTTGTTGCGAAATGAGTCAGACCCGAGCAGCGATTTCACTGAA
CAGAGGAATATCATCCTTCTGAAAAGGACAGAGAAAAATGCGTCTTTGTT
TGCTCTGATTGTTGCTGCTGTGTTACTTCTGATCTCTCGACTAATTGTAC
GAACAATTCTTGCAAACGATGTGGAAGAAGGACTACAGCAGTTCATCAAG
GATCAGCTCCCAGTTCCGCGACAGACATCGCTGTTACGAGCTGGTGGGGA
AAAGCTATCTTTTCGAGTGAAATATCAGGTCGGGGAAGTCGGGTATTATG
GTATGGTGCAAGAAGGTTTGCCTGAGACAGACAGGTTTGAAGGTGGTGTT
GTAGGAAGCGATGATATGAGGAATTGGAGGGATTTTGCACCTCAAGCGCG
TTGCTAG

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:20460..21866-

>Gcaud2580.t1 ID=Gcaud2580.t1|Name=Gcaud2580.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1407bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:20460..21866- (Gracilaria caudata M_176_S67 male)
ATGATTCGAAACAATAAGCTCTACTATTCAGCGGTTGAAGCTCCATGGTA
TTCCTTCGAAATCTCTCGCACATCCTTGAGCTCTATTGTTACCTCAGTGT
TAATCACTTTGATTGCTTACCAGACGGCAGCTATTCTTTTTGACACTGTT
CTCGGCTTGGAAAAGCGCCACCAAGCTAAACTGAAACACCTAGCCGTTGT
CATCCTCACGAGGTACCTGTCTTCTCCACTAGCTATCTTGAATAGTCTAA
TAAGGAAAGATTGGCTCACGCGTCTTTACTATGGGGGCGATATTCCTAAG
GACACCGCCATATCCCGAGATCCGGAACGTGTGAAAGTCAAGACAGTTCT
CGTCGTTCTGCTTCTTGTAACTGCCACGCCCCTGATCGATGTTGTTCTTT
TGGCTCTTGCCATGTCCAGAACACAAACTTTAGACCTTGATCAGGCAGGA
TTTGGAGCTGTGCGCTTTGGCGTGAGTGACCCTGCTGATGCCCTCGAAAC
AACCCCGTATCTGTCACTTTGCCGAACAGTCTCGTTTGAGGAGAGAAGCA
GCGATGTACTGCAGGCTTCCTTTCGACTGTGCGAAAGTCCAATCTTGCCG
GAGGATGAAAATCCGAATGTTACTGGCATAGAAATTACGATGGAACAAGA
CTATTCGGTGACTACGAGAGTTATATTCCAGGGTTTGGTAATGTTGGGAG
TGAAGTGGGCACGCCTTCAGGCCGAGGAAGGTAACTTTTGGGTGAGGGGA
GGTCTGACAGAAAACTCCTCTGCTCTCCTTGTGCAAACTGCTCTTGAACA
GTTTTCCGAATACTGTGGGGAAACGAACGTTCTTGGTCCTGTACCAGCAA
AGAGGAATGAGCAATTTAACTCAGGGAAACGGTTGATTGAATCAGTTGGA
ATCGAATGCGAAAATGTATCAACGACGCGTGAATTGAAGAATCAGATCAC
TACGAACATTACAATTGCTTTGAGACAGAGAATGACATTAGTGAGTTCAG
ACCAGCTGTTGTTGCGAAATGAGTCAGACCCGAGCAGCGATTTCACTGAA
CAGAGGAATATCATCCTTCTGAAAAGGACAGAGAAAAATGCGTCTTTGTT
TGCTCTGATTGTTGCTGCTGTGTTACTTCTGATCTCTCGACTAATTGTAC
GAACAATTCTTGCAAACGATGTGGAAGAAGGACTACAGCAGTTCATCAAG
GATCAGCTCCCAGTTCCGCGACAGACATCGCTGTTACGAGCTGGTGGGGA
AAAGCTATCTTTTCGAGTGAAATATCAGGTCGGGGAAGTCGGGTATTATG
GTATGGTGCAAGAAGGTTTGCCTGAGACAGACAGGTTTGAAGGTGGTGTT
GTAGGAAGCGATGATATGAGGAATTGGAGGGATTTTGCACCTCAAGCGCG
TTGCTAG