Gcaud2577.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2577.t1
Unique NameGcaud2577.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Homology
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BLAST of Gcaud2577.t1 vs. uniprot
Match: A0A2V3IVZ6_9FLOR (Two-component response regulator-like APRR1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVZ6_9FLOR)

HSP 1 Score: 223 bits (569), Expect = 1.160e-71
Identity = 128/158 (81.01%), Postives = 138/158 (87.34%), Query Frame = 0 
Query:    1 MARISSETNLAVQLLLAVSDARHCRPSSKEPRPNSSSATSSDLPGDSSDDSESTDCVVTPTQSPTLRQKVASHPVTSPRGVPPTFGRGDATFFKYTHEERQEALKRFREKKRRRQFQKXXXXXXXXRLAETRPRYKGRFSKPPPGENYDDGTPGPPAK 158
            ++RISSETNLAVQLLLAVSDARHCRPS++  RP+SSSATSSD+P D SDDS+S D   T  QSP LRQK+ + P TSPRGVPPTF RGDATFFKYT EERQEALKRFREKKRRRQF+ XXXXXXXX LAETRPRYKGRFSKPPPGE YDDGTPGPP K
Sbjct:   12 LSRISSETNLAVQLLLAVSDARHCRPSTQHGRPHSSSATSSDMPADLSDDSDSIDSTPTSAQSPALRQKITTPPSTSPRGVPPTFARGDATFFKYTREERQEALKRFREKKRRRQFRXXXXXXXXXXLAETRPRYKGRFSKPPPGETYDDGTPGPPPK 169
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BLAST of Gcaud2577.t1 vs. uniprot
Match: R7Q474_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q474_CHOCR)

HSP 1 Score: 132 bits (333), Expect = 4.440e-36
Identity = 90/167 (53.89%), Postives = 106/167 (63.47%), Query Frame = 0 
Query:    1 MARISSETNLAVQLLLAVSD---------ARHCRPSSKEPRPNSSSATSSDLPGDSSDDSESTDCVVTPTQSPTLRQKVASHPVTSPRGVPPTFGRG-DATFFKYTHEERQEALKRFREKKRRRQFQKXXXXXXXXRLAETRPRYKGRFSKPPPGENYDDGTPGPPA 157
            M RI+SETNLAVQLLLAVS           R   P++  P    SS +S   PG++  DS++T+   +   SP +  K  S PV   +      GRG D+T F+YT EER +ALKRFR+KKRRRQFQK        RLAETRPRYKGRFSKPPPGENYDDGTPGP A
Sbjct:    1 MQRINSETNLAVQLLLAVSGDRPIVKRTPKRFALPAAS-PHIYRSSPSSCSEPGETCSDSDATEPATSAVASPAI-MKATSSPVALSKS---HHGRGADSTLFRYTREERLQALKRFRDKKRRRQFQKKVRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGPQA 162
The following BLAST results are available for this feature:
BLAST of Gcaud2577.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IVZ6_9FLOR1.160e-7181.01Two-component response regulator-like APRR1 n=1 Ta... [more]
R7Q474_CHOCR4.440e-3653.89CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 100..141
e-value: 9.0E-15
score: 54.5
IPR010402CCT domainPROSITEPS51017CCTcoord: 100..142
score: 14.76298
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..178
NoneNo IPR availablePANTHERPTHR31874:SF1CCT MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 32..141
NoneNo IPR availablePANTHERPTHR31874CCT MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 32..141
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..178
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_427_length_25918_cov_4.599721contigNODE_427_length_25918_cov_4.599721:15769..16305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1Gcaud2577.t1Gracilaria caudata M_176_S67 malemRNANODE_427_length_25918_cov_4.599721 15769..16305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MARISSETNLAVQLLLAVSDARHCRPSSKEPRPNSSSATSSDLPGDSSDD
SESTDCVVTPTQSPTLRQKVASHPVTSPRGVPPTFGRGDATFFKYTHEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPPAKPHPSKNTNASQKQNKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain