Gcaud2577.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2577.t1
Unique NameGcaud2577.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_427_length_25918_cov_4.599721contigNODE_427_length_25918_cov_4.599721:15769..16305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2577Gcaud2577Gracilaria caudata M_176_S67 malegeneNODE_427_length_25918_cov_4.599721 15769..16305 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1.start1Gcaud2577.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_427_length_25918_cov_4.599721 15769..15771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1.CDS1Gcaud2577.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_427_length_25918_cov_4.599721 15769..16305 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1.exon1Gcaud2577.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_427_length_25918_cov_4.599721 15769..16305 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1.stop1Gcaud2577.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_427_length_25918_cov_4.599721 16303..16305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2577.t1Gcaud2577.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_427_length_25918_cov_4.599721 15769..16305 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=179bp
MARISSETNLAVQLLLAVSDARHCRPSSKEPRPNSSSATSSDLPGDSSDD
SESTDCVVTPTQSPTLRQKVASHPVTSPRGVPPTFGRGDATFFKYTHEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPPAKPHPSKNTNASQKQNKQ*
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spliced messenger RNA

>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:15769..16305+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGATAAGCAGCGAGACGAACCTGGCTGTGCAACTTCTTCTCGC
CGTCAGTGATGCCCGCCACTGCAGACCGTCATCCAAGGAGCCCCGCCCCA
ACTCGAGCAGTGCCACCTCATCAGACCTACCAGGCGACTCAAGTGACGAC
TCGGAGTCTACCGACTGCGTTGTCACTCCCACCCAGTCCCCGACCTTGCG
TCAGAAGGTCGCCTCTCATCCTGTCACGTCTCCAAGGGGCGTGCCACCCA
CTTTTGGTCGTGGCGACGCAACCTTTTTCAAGTACACTCATGAGGAGAGA
CAAGAAGCGCTCAAGCGCTTCCGAGAGAAGAAGAGGCGTCGCCAGTTTCA
AAAGAGAGTGAGGTACATGGTCAGGAAACGCCTAGCGGAGACCAGGCCGA
GATACAAGGGGCGCTTTTCAAAACCTCCACCAGGCGAGAACTATGATGAT
GGTACCCCGGGTCCACCAGCCAAACCACCAGCCAAGCCACACCCGTCGAA
GAACACCAATGCATCGCAAAAGCAGAACAAACAATAG
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protein sequence of Gcaud2577.t1

>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MARISSETNLAVQLLLAVSDARHCRPSSKEPRPNSSSATSSDLPGDSSDD
SESTDCVVTPTQSPTLRQKVASHPVTSPRGVPPTFGRGDATFFKYTHEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPPAKPHPSKNTNASQKQNKQ*
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mRNA from alignment at NODE_427_length_25918_cov_4.599721:15769..16305+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:15769..16305+ (Gracilaria caudata M_176_S67 male)
ATGGCGCGGATAAGCAGCGAGACGAACCTGGCTGTGCAACTTCTTCTCGC
CGTCAGTGATGCCCGCCACTGCAGACCGTCATCCAAGGAGCCCCGCCCCA
ACTCGAGCAGTGCCACCTCATCAGACCTACCAGGCGACTCAAGTGACGAC
TCGGAGTCTACCGACTGCGTTGTCACTCCCACCCAGTCCCCGACCTTGCG
TCAGAAGGTCGCCTCTCATCCTGTCACGTCTCCAAGGGGCGTGCCACCCA
CTTTTGGTCGTGGCGACGCAACCTTTTTCAAGTACACTCATGAGGAGAGA
CAAGAAGCGCTCAAGCGCTTCCGAGAGAAGAAGAGGCGTCGCCAGTTTCA
AAAGAGAGTGAGGTACATGGTCAGGAAACGCCTAGCGGAGACCAGGCCGA
GATACAAGGGGCGCTTTTCAAAACCTCCACCAGGCGAGAACTATGATGAT
GGTACCCCGGGTCCACCAGCCAAACCACCAGCCAAGCCACACCCGTCGAA
GAACACCAATGCATCGCAAAAGCAGAACAAACAATAG
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Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:15769..16305+

>Gcaud2577.t1 ID=Gcaud2577.t1|Name=Gcaud2577.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=537bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:15769..16305+ (Gracilaria caudata M_176_S67 male)
ATGGCGCGGATAAGCAGCGAGACGAACCTGGCTGTGCAACTTCTTCTCGC
CGTCAGTGATGCCCGCCACTGCAGACCGTCATCCAAGGAGCCCCGCCCCA
ACTCGAGCAGTGCCACCTCATCAGACCTACCAGGCGACTCAAGTGACGAC
TCGGAGTCTACCGACTGCGTTGTCACTCCCACCCAGTCCCCGACCTTGCG
TCAGAAGGTCGCCTCTCATCCTGTCACGTCTCCAAGGGGCGTGCCACCCA
CTTTTGGTCGTGGCGACGCAACCTTTTTCAAGTACACTCATGAGGAGAGA
CAAGAAGCGCTCAAGCGCTTCCGAGAGAAGAAGAGGCGTCGCCAGTTTCA
AAAGAGAGTGAGGTACATGGTCAGGAAACGCCTAGCGGAGACCAGGCCGA
GATACAAGGGGCGCTTTTCAAAACCTCCACCAGGCGAGAACTATGATGAT
GGTACCCCGGGTCCACCAGCCAAACCACCAGCCAAGCCACACCCGTCGAA
GAACACCAATGCATCGCAAAAGCAGAACAAACAATAG
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