Gcaud80.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud80.t1
Unique NameGcaud80.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length677
Homology
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BLAST of Gcaud80.t1 vs. uniprot
Match: A0A2V3IY16_9FLOR (Cytochrome c oxidase assembly factor 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY16_9FLOR)

HSP 1 Score: 206 bits (523), Expect = 3.670e-52
Identity = 153/572 (26.75%), Postives = 275/572 (48.08%), Query Frame = 0 
Query:   11 EALERREVQCQLVWTVQNSVEAMLLHEQGKY-GEDESEITRIATIMLFLLSFPGLKLDVGNLQELPVSQNSRECCVISMGCVGNKEQEDAGTAHGTGSEHGFLNVDFRVLCRPQEIFVRAEIHISGKCILSLVNTDGKEFKWKWWRDAFLGRLEGFQEWQKDMGISPVTLELGKKENDGSALQDIGTAPYATARIWAEWPPFRPQFCRFEIESEHMLKQPVTIQQK--NIFTNLPDINYNITRLPIQNIQSVSYHEAHEWLLKDSCRLVEDILKQMGSTQIDAPGSASNAQRSEIFMRRSGEHSISSGKLIFLQKDALHHGRAEAFQACMGML----REQGRIWEAIHLLRSYVG--IWFSSNTGKDQKGRESVVTEVILPECERLITCYAGTKSQAENIVDVLNICLVVNLAKHEKQVILLMQQMLALHSNIESELYILQAMAKCFVFMEELRRRHHDGVRNDDLYASLGFEQSS-SRETTRVALFILEKICVRSATWKKAKSDNCGLRMSTAFQIM------------------WAEAMNGLGELLQEGSHGVQRDLPQAMQLYERAMTE 554
            +AL RR VQC+L+W +QN++E+ L+ E   +   D  +   I+ +MLF+LSFP L + V     +        CC I +   G++        H   +      V    +C PQ+  V   I  +G+C +  V  D + F+W+WWRDAFLGRLEGF+EWQ    I  V L+L ++  +   +  + TA +++ + W EW PFR   C++E+ES+ +L+QP  ++ K  +I      I  +   +P+Q+I+ VSY EA + LL  +C LV+D LK        +    +    +++ ++  G+    S  +   +  A+ +GR +A Q  + +L    +        + +L++++G  + ++S +       E+ +   +LPECERL+      +    ++VD+++  L+ N   H ++ +L +Q++L L  +  + +  L  +A     +E           N+ + + +G E    S E  R  L +LE + V + T    +  N  ++    ++ +                     AM  L  LL  G+ GVQ D  +A+++YE  + E
Sbjct:  656 KALGRRSVQCRLIWEIQNALESTLMVEAEFFEAVDTDQTFCISMMMLFILSFPSLTVTVHESNPVVEQYEQNGCCCIRI--EGSQTSIIPCENHECDTSTAVTIVP---ICGPQKFSVVVNITTTGQCSMR-VFADRERFQWQWWRDAFLGRLEGFREWQTQQNIPCVELDLDEEYAEAPGISKLRTATHSSFQTWNEWTPFRAIICKYELESDGLLQQPCVVELKTPSIRDEKAGITNHFVEIPVQDIKEVSYEEADDALLMHTCLLVQDALKHQPVLMNVSHDEGTGGNPADLLIKL-GDTLEPSRAVNLYEIAAVQYGRVDALQRSLQLLFTLDKSPDDYSRGLDILQTFLGTMLSYTSVSVHISPENETKLRNHVLPECERLLGMVGDRRDIYRSLVDLIHAYLICNPRNHHERAMLTLQKVLFLSHSKHASVRALCDIAHATSCIESAE------CGNETICSLVGLEPKHFSAEHGRFRLELLE-LAVDTGTRLSRRLSNEVVKKQAVYEDIRNFATQHKLHQRGIKKMDHVRAMYSLAVLLDVGTGGVQPDARRAVEMYESLIEE 1213
The following BLAST results are available for this feature:
BLAST of Gcaud80.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IY16_9FLOR3.670e-5226.75Cytochrome c oxidase assembly factor 7 n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 600..630
e-value: 24.0
score: 10.4
coord: 558..592
e-value: 3.0
score: 16.8
coord: 631..667
e-value: 0.0022
score: 27.2
coord: 520..556
e-value: 5.8E-5
score: 32.5
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 600..626
e-value: 0.23
score: 12.2
coord: 520..553
e-value: 1.4E-4
score: 22.5
coord: 632..664
e-value: 3.3E-5
score: 24.4
coord: 559..589
e-value: 1.9
score: 9.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 508..672
e-value: 3.3E-30
score: 107.1
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 581..664
coord: 520..574
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 581..664
coord: 520..574
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 519..665

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4242_length_2432_cov_4.634344contigNODE_4242_length_2432_cov_4.634344:81..2342 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud80.t1Gcaud80.t1Gracilaria caudata M_176_S67 malemRNANODE_4242_length_2432_cov_4.634344 81..2342 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=677bp
MQWVLKQSGFEALERREVQCQLVWTVQNSVEAMLLHEQGKYGEDESEITR
IATIMLFLLSFPGLKLDVGNLQELPVSQNSRECCVISMGCVGNKEQEDAG
TAHGTGSEHGFLNVDFRVLCRPQEIFVRAEIHISGKCILSLVNTDGKEFK
WKWWRDAFLGRLEGFQEWQKDMGISPVTLELGKKENDGSALQDIGTAPYA
TARIWAEWPPFRPQFCRFEIESEHMLKQPVTIQQKNIFTNLPDINYNITR
LPIQNIQSVSYHEAHEWLLKDSCRLVEDILKQMGSTQIDAPGSASNAQRS
EIFMRRSGEHSISSGKLIFLQKDALHHGRAEAFQACMGMLREQGRIWEAI
HLLRSYVGIWFSSNTGKDQKGRESVVTEVILPECERLITCYAGTKSQAEN
IVDVLNICLVVNLAKHEKQVILLMQQMLALHSNIESELYILQAMAKCFVF
MEELRRRHHDGVRNDDLYASLGFEQSSSRETTRVALFILEKICVRSATWK
KAKSDNCGLRMSTAFQIMWAEAMNGLGELLQEGSHGVQRDLPQAMQLYER
AMTEGNSPNAMLNLGHILHYGEVAPDALLSKKNYERAIEEANLPWALDCL
GLLLEHGGQGVPPEPRQAMQHYEQAILADYPPAMINLASLLRRGAGGVPP
DAQRALKLYERAIECSTEGSKEWVDVT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf