Gcaud80.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud80.t1
Unique Name	Gcaud80.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4242_length_2432_cov_4.634344	contig	NODE_4242_length_2432_cov_4.634344:81..2342 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud80	Gcaud80	Gracilaria caudata M_176_S67 male	gene	NODE_4242_length_2432_cov_4.634344 81..2342 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud80.t1	Gcaud80.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4242_length_2432_cov_4.634344 81..2342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud80.t1.CDS1	Gcaud80.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4242_length_2432_cov_4.634344 81..400 -
Gcaud80.t1.CDS2	Gcaud80.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_4242_length_2432_cov_4.634344 632..2342 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud80.t1.exon1	Gcaud80.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4242_length_2432_cov_4.634344 81..400 -
Gcaud80.t1.exon2	Gcaud80.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_4242_length_2432_cov_4.634344 632..2342 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud80.t1.intron1	Gcaud80.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_4242_length_2432_cov_4.634344 401..631 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud80.t1.start1	Gcaud80.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4242_length_2432_cov_4.634344 2340..2342 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4242_length_2432_cov_4.634344:81..2342-
coding sequence from alignment at NODE_4242_length_2432_cov_4.634344:81..2342-

mRNA sequence

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=677bp
MQWVLKQSGFEALERREVQCQLVWTVQNSVEAMLLHEQGKYGEDESEITR
IATIMLFLLSFPGLKLDVGNLQELPVSQNSRECCVISMGCVGNKEQEDAG
TAHGTGSEHGFLNVDFRVLCRPQEIFVRAEIHISGKCILSLVNTDGKEFK
WKWWRDAFLGRLEGFQEWQKDMGISPVTLELGKKENDGSALQDIGTAPYA
TARIWAEWPPFRPQFCRFEIESEHMLKQPVTIQQKNIFTNLPDINYNITR
LPIQNIQSVSYHEAHEWLLKDSCRLVEDILKQMGSTQIDAPGSASNAQRS
EIFMRRSGEHSISSGKLIFLQKDALHHGRAEAFQACMGMLREQGRIWEAI
HLLRSYVGIWFSSNTGKDQKGRESVVTEVILPECERLITCYAGTKSQAEN
IVDVLNICLVVNLAKHEKQVILLMQQMLALHSNIESELYILQAMAKCFVF
MEELRRRHHDGVRNDDLYASLGFEQSSSRETTRVALFILEKICVRSATWK
KAKSDNCGLRMSTAFQIMWAEAMNGLGELLQEGSHGVQRDLPQAMQLYER
AMTEGNSPNAMLNLGHILHYGEVAPDALLSKKNYERAIEEANLPWALDCL
GLLLEHGGQGVPPEPRQAMQHYEQAILADYPPAMINLASLLRRGAGGVPP
DAQRALKLYERAIECSTEGSKEWVDVT

spliced messenger RNA

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at NODE_4242_length_2432_cov_4.634344:81..2342- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGGGTGCTAAAGCAATCTGGGTTCGAAGCACTAGAAAGACGAGA
AGTGCAATGTCAGCTTGTGTGGACAGTACAGAACAGCGTGGAAGCAATGT
TGCTTCATGAGCAGGGGAAATATGGAGAAGACGAAAGTGAGATAACGAGA
ATAGCTACCATTATGCTGTTTCTGCTGTCATTCCCGGGGCTTAAACTCGA
CGTTGGTAATTTGCAAGAACTTCCTGTTTCCCAGAATAGCAGAGAATGTT
GTGTCATTAGCATGGGGTGCGTAGGAAACAAGGAACAGGAAGATGCGGGA
ACGGCTCATGGAACTGGCAGTGAACATGGCTTCTTGAACGTTGACTTTCG
AGTATTATGTCGTCCGCAAGAAATTTTCGTGAGAGCTGAAATTCATATAT
CTGGAAAATGTATTCTGAGTTTGGTCAATACTGATGGGAAAGAATTCAAG
TGGAAATGGTGGCGTGATGCTTTCCTTGGACGACTTGAAGGTTTTCAGGA
GTGGCAGAAGGACATGGGTATTTCACCTGTCACGTTGGAACTCGGCAAAA
AAGAGAATGACGGGAGCGCTCTACAGGATATTGGCACAGCTCCGTATGCA
ACAGCAAGGATATGGGCAGAATGGCCCCCGTTCCGACCACAGTTTTGTCG
ATTTGAAATAGAGAGCGAGCATATGTTGAAACAACCGGTGACAATTCAAC
AAAAAAACATCTTTACAAACCTCCCCGACATCAATTACAATATAACACGT
CTCCCAATCCAGAACATACAGTCTGTCTCATACCATGAGGCCCACGAATG
GTTGCTGAAGGATTCTTGCCGTCTTGTGGAGGATATATTGAAGCAGATGG
GATCCACACAAATAGATGCACCAGGAAGTGCCTCGAATGCGCAGCGCTCT
GAGATTTTTATGAGAAGAAGTGGGGAACATTCAATTTCTTCCGGCAAACT
TATTTTTCTTCAGAAAGATGCACTACACCATGGAAGAGCAGAGGCTTTCC
AAGCTTGCATGGGCATGCTTCGAGAGCAAGGAAGAATTTGGGAGGCGATA
CACCTTTTACGCAGCTACGTAGGAATATGGTTTTCTTCTAACACTGGAAA
AGATCAAAAAGGAAGAGAGTCCGTGGTGACAGAAGTTATACTTCCAGAAT
GCGAAAGGTTGATTACATGTTACGCAGGCACAAAATCTCAGGCGGAGAAT
ATTGTCGACGTTCTGAACATCTGCTTAGTGGTAAACCTGGCCAAACACGA
AAAGCAGGTAATATTATTGATGCAACAGATGCTGGCGCTCCACAGCAATA
TTGAATCAGAACTATATATTCTTCAAGCTATGGCCAAATGCTTTGTATTT
ATGGAAGAACTGAGACGTCGACATCATGACGGCGTAAGAAATGACGATTT
GTATGCGTCTCTTGGATTCGAGCAAAGCTCTTCAAGAGAGACGACTCGCG
TTGCTCTTTTCATTCTAGAAAAAATATGCGTACGGAGTGCGACCTGGAAG
AAGGCAAAATCCGACAATTGTGGGTTGAGAATGAGCACAGCGTTTCAAAT
TATGTGGGCTGAAGCAATGAACGGCTTGGGAGAGTTGCTTCAAGAAGGTT
CACATGGGGTGCAGCGGGACCTCCCACAAGCAATGCAGCTTTACGAAAGA
GCAATGACAGAGGGAAATTCGCCGAATGCAATGCTCAATCTTGGACATAT
ACTACACTATGGTGAGGTGGCGCCGGACGCTCTTCTATCGAAGAAGAATT
ACGAAAGAGCCATAGAGGAAGCAAACTTGCCATGGGCGTTGGACTGTCTT
GGACTTCTACTCGAACACGGTGGGCAGGGAGTGCCTCCAGAACCCCGACA
GGCAATGCAGCACTATGAACAAGCCATATTGGCAGACTATCCGCCGGCGA
TGATCAACCTGGCTAGTCTACTTCGACGTGGAGCAGGCGGAGTACCGCCA
GATGCCCAACGGGCATTAAAGCTCTACGAAAGAGCAATAGAGTGCAGCAC
TGAGGGATCGAAAGAGTGGGTGGATGTAACA

protein sequence of Gcaud80.t1

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=677bp
MQWVLKQSGFEALERREVQCQLVWTVQNSVEAMLLHEQGKYGEDESEITR
IATIMLFLLSFPGLKLDVGNLQELPVSQNSRECCVISMGCVGNKEQEDAG
TAHGTGSEHGFLNVDFRVLCRPQEIFVRAEIHISGKCILSLVNTDGKEFK
WKWWRDAFLGRLEGFQEWQKDMGISPVTLELGKKENDGSALQDIGTAPYA
TARIWAEWPPFRPQFCRFEIESEHMLKQPVTIQQKNIFTNLPDINYNITR
LPIQNIQSVSYHEAHEWLLKDSCRLVEDILKQMGSTQIDAPGSASNAQRS
EIFMRRSGEHSISSGKLIFLQKDALHHGRAEAFQACMGMLREQGRIWEAI
HLLRSYVGIWFSSNTGKDQKGRESVVTEVILPECERLITCYAGTKSQAEN
IVDVLNICLVVNLAKHEKQVILLMQQMLALHSNIESELYILQAMAKCFVF
MEELRRRHHDGVRNDDLYASLGFEQSSSRETTRVALFILEKICVRSATWK
KAKSDNCGLRMSTAFQIMWAEAMNGLGELLQEGSHGVQRDLPQAMQLYER
AMTEGNSPNAMLNLGHILHYGEVAPDALLSKKNYERAIEEANLPWALDCL
GLLLEHGGQGVPPEPRQAMQHYEQAILADYPPAMINLASLLRRGAGGVPP
DAQRALKLYERAIECSTEGSKEWVDVT

mRNA from alignment at NODE_4242_length_2432_cov_4.634344:81..2342-

Legend: polypeptideCDSexonstart_codonintron

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at NODE_4242_length_2432_cov_4.634344:81..2342- (Gracilaria caudata M_176_S67 male)
ATGCAGTGGGTGCTAAAGCAATCTGGGTTCGAAGCACTAGAAAGACGAGA
AGTGCAATGTCAGCTTGTGTGGACAGTACAGAACAGCGTGGAAGCAATGT
TGCTTCATGAGCAGGGGAAATATGGAGAAGACGAAAGTGAGATAACGAGA
ATAGCTACCATTATGCTGTTTCTGCTGTCATTCCCGGGGCTTAAACTCGA
CGTTGGTAATTTGCAAGAACTTCCTGTTTCCCAGAATAGCAGAGAATGTT
GTGTCATTAGCATGGGGTGCGTAGGAAACAAGGAACAGGAAGATGCGGGA
ACGGCTCATGGAACTGGCAGTGAACATGGCTTCTTGAACGTTGACTTTCG
AGTATTATGTCGTCCGCAAGAAATTTTCGTGAGAGCTGAAATTCATATAT
CTGGAAAATGTATTCTGAGTTTGGTCAATACTGATGGGAAAGAATTCAAG
TGGAAATGGTGGCGTGATGCTTTCCTTGGACGACTTGAAGGTTTTCAGGA
GTGGCAGAAGGACATGGGTATTTCACCTGTCACGTTGGAACTCGGCAAAA
AAGAGAATGACGGGAGCGCTCTACAGGATATTGGCACAGCTCCGTATGCA
ACAGCAAGGATATGGGCAGAATGGCCCCCGTTCCGACCACAGTTTTGTCG
ATTTGAAATAGAGAGCGAGCATATGTTGAAACAACCGGTGACAATTCAAC
AAAAAAACATCTTTACAAACCTCCCCGACATCAATTACAATATAACACGT
CTCCCAATCCAGAACATACAGTCTGTCTCATACCATGAGGCCCACGAATG
GTTGCTGAAGGATTCTTGCCGTCTTGTGGAGGATATATTGAAGCAGATGG
GATCCACACAAATAGATGCACCAGGAAGTGCCTCGAATGCGCAGCGCTCT
GAGATTTTTATGAGAAGAAGTGGGGAACATTCAATTTCTTCCGGCAAACT
TATTTTTCTTCAGAAAGATGCACTACACCATGGAAGAGCAGAGGCTTTCC
AAGCTTGCATGGGCATGCTTCGAGAGCAAGGAAGAATTTGGGAGGCGATA
CACCTTTTACGCAGCTACGTAGGAATATGGTTTTCTTCTAACACTGGAAA
AGATCAAAAAGGAAGAGAGTCCGTGGTGACAGAAGTTATACTTCCAGAAT
GCGAAAGGTTGATTACATGTTACGCAGGCACAAAATCTCAGGCGGAGAAT
ATTGTCGACGTTCTGAACATCTGCTTAGTGGTAAACCTGGCCAAACACGA
AAAGCAGGTAATATTATTGATGCAACAGATGCTGGCGCTCCACAGCAATA
TTGAATCAGAACTATATATTCTTCAAGCTATGGCCAAATGCTTTGTATTT
ATGGAAGAACTGAGACGTCGACATCATGACGGCGTAAGAAATGACGATTT
GTATGCGTCTCTTGGATTCGAGCAAAGCTCTTCAAGAGAGACGACTCGCG
TTGCTCTTTTCATTCTAGAAAAAATATGCGTACGGAGTGCGACCTGGAAG
AAGGCAAAATCCGACAATTGTGGGTTGAGAATGAGCACAGCGTTTCAAAT
TATGTGGGCTGAAGCAATGAACGGCTTGGGAGAGTTGCTTCAAGAAGGTT
CACATGGGGTGCAGCGGGACCTCCCACAAGCAATGCAGCTTTACGAAAGA
GCAATGACAGAGGGAAATTCGCCGAATGCAATGCTCAATCTTGGACATAT
ACTACACTATGGTGCCCATGGCCTCCCGCCAGACCCCCCACAGGCAGTGA
AGCTATACGAAAGAGCCATCGAGGAGGGAGATTTGAAGCGCGCCATGAAT
GGACTTGGGATACTACTCCAAGATGGTGCGCATGGAGTGGAGCCAGACCC
ACATCGGGCAGTTTTGCTTTTTGAAAGAGCCATAGCAAAGGGTTTGCCGG
GTGCCATGTTCAACCTCGGAGTTCTTTTTCACTATGGCGCAGGTGAGGTG
GCGCCGGACGCTCTTCTATCGAAGAAGAATTACGAAAGAGCCATAGAGGA
AGCAAACTTGCCATGGGCGTTGGACTGTCTTGGACTTCTACTCGAACACG
GTGGGCAGGGAGTGCCTCCAGAACCCCGACAGGCAATGCAGCACTATGAA
CAAGCCATATTGGCAGACTATCCGCCGGCGATGATCAACCTGGCTAGTCT
ACTTCGACGTGGAGCAGGCGGAGTACCGCCAGATGCCCAACGGGCATTAA
AGCTCTACGAAAGAGCAATAGAGTGCAGCACTGAGGGATCGAAAGAGTGG
GTGGATGTAACA

Coding sequence (CDS) from alignment at NODE_4242_length_2432_cov_4.634344:81..2342-

>Gcaud80.t1 ID=Gcaud80.t1|Name=Gcaud80.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2031bp|location=Sequence derived from alignment at NODE_4242_length_2432_cov_4.634344:81..2342- (Gracilaria caudata M_176_S67 male)
ATGCAGTGGGTGCTAAAGCAATCTGGGTTCGAAGCACTAGAAAGACGAGA
AGTGCAATGTCAGCTTGTGTGGACAGTACAGAACAGCGTGGAAGCAATGT
TGCTTCATGAGCAGGGGAAATATGGAGAAGACGAAAGTGAGATAACGAGA
ATAGCTACCATTATGCTGTTTCTGCTGTCATTCCCGGGGCTTAAACTCGA
CGTTGGTAATTTGCAAGAACTTCCTGTTTCCCAGAATAGCAGAGAATGTT
GTGTCATTAGCATGGGGTGCGTAGGAAACAAGGAACAGGAAGATGCGGGA
ACGGCTCATGGAACTGGCAGTGAACATGGCTTCTTGAACGTTGACTTTCG
AGTATTATGTCGTCCGCAAGAAATTTTCGTGAGAGCTGAAATTCATATAT
CTGGAAAATGTATTCTGAGTTTGGTCAATACTGATGGGAAAGAATTCAAG
TGGAAATGGTGGCGTGATGCTTTCCTTGGACGACTTGAAGGTTTTCAGGA
GTGGCAGAAGGACATGGGTATTTCACCTGTCACGTTGGAACTCGGCAAAA
AAGAGAATGACGGGAGCGCTCTACAGGATATTGGCACAGCTCCGTATGCA
ACAGCAAGGATATGGGCAGAATGGCCCCCGTTCCGACCACAGTTTTGTCG
ATTTGAAATAGAGAGCGAGCATATGTTGAAACAACCGGTGACAATTCAAC
AAAAAAACATCTTTACAAACCTCCCCGACATCAATTACAATATAACACGT
CTCCCAATCCAGAACATACAGTCTGTCTCATACCATGAGGCCCACGAATG
GTTGCTGAAGGATTCTTGCCGTCTTGTGGAGGATATATTGAAGCAGATGG
GATCCACACAAATAGATGCACCAGGAAGTGCCTCGAATGCGCAGCGCTCT
GAGATTTTTATGAGAAGAAGTGGGGAACATTCAATTTCTTCCGGCAAACT
TATTTTTCTTCAGAAAGATGCACTACACCATGGAAGAGCAGAGGCTTTCC
AAGCTTGCATGGGCATGCTTCGAGAGCAAGGAAGAATTTGGGAGGCGATA
CACCTTTTACGCAGCTACGTAGGAATATGGTTTTCTTCTAACACTGGAAA
AGATCAAAAAGGAAGAGAGTCCGTGGTGACAGAAGTTATACTTCCAGAAT
GCGAAAGGTTGATTACATGTTACGCAGGCACAAAATCTCAGGCGGAGAAT
ATTGTCGACGTTCTGAACATCTGCTTAGTGGTAAACCTGGCCAAACACGA
AAAGCAGGTAATATTATTGATGCAACAGATGCTGGCGCTCCACAGCAATA
TTGAATCAGAACTATATATTCTTCAAGCTATGGCCAAATGCTTTGTATTT
ATGGAAGAACTGAGACGTCGACATCATGACGGCGTAAGAAATGACGATTT
GTATGCGTCTCTTGGATTCGAGCAAAGCTCTTCAAGAGAGACGACTCGCG
TTGCTCTTTTCATTCTAGAAAAAATATGCGTACGGAGTGCGACCTGGAAG
AAGGCAAAATCCGACAATTGTGGGTTGAGAATGAGCACAGCGTTTCAAAT
TATGTGGGCTGAAGCAATGAACGGCTTGGGAGAGTTGCTTCAAGAAGGTT
CACATGGGGTGCAGCGGGACCTCCCACAAGCAATGCAGCTTTACGAAAGA
GCAATGACAGAGGGAAATTCGCCGAATGCAATGCTCAATCTTGGACATAT
ACTACACTATGGTGAGGTGGCGCCGGACGCTCTTCTATCGAAGAAGAATT
ACGAAAGAGCCATAGAGGAAGCAAACTTGCCATGGGCGTTGGACTGTCTT
GGACTTCTACTCGAACACGGTGGGCAGGGAGTGCCTCCAGAACCCCGACA
GGCAATGCAGCACTATGAACAAGCCATATTGGCAGACTATCCGCCGGCGA
TGATCAACCTGGCTAGTCTACTTCGACGTGGAGCAGGCGGAGTACCGCCA
GATGCCCAACGGGCATTAAAGCTCTACGAAAGAGCAATAGAGTGCAGCAC
TGAGGGATCGAAAGAGTGGGTGGATGTAACA