Gcaud1317.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1317.t1
Unique NameGcaud1317.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length218
Homology
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A2V3ITC7_9FLOR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITC7_9FLOR)

HSP 1 Score: 301 bits (772), Expect = 1.570e-101
Identity = 144/217 (66.36%), Postives = 182/217 (83.87%), Query Frame = 0
Query:    1 MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKKYVVAPAAKAAKTE 217
            ++TRYL +YN  M VGWS VL+RLLQA+   SSVY+AV  PL +FQTGA+LE+IHS+ GL+RAPV+TT LQV+SRLM++WG+  PV  +RSN+SF  M++AWSLTEIPRYLYFTV+S A HVP WLT++RY+TF+PLYPLGASSEWLT+YAAL +IR  KL+++SLPN  NFAF+Y+ + +++L +YIPGLPHMYSHMLRQRKKYV  P AK AK +
Sbjct:    2 LSTRYLFLYNAVMCVGWSAVLVRLLQAISTGSSVYEAVQAPLKIFQTGALLEVIHSVIGLIRAPVATTLLQVSSRLMILWGVTQPVEPVRSNLSFIAMIIAWSLTEIPRYLYFTVASVARHVPSWLTFIRYTTFIPLYPLGASSEWLTLYAALPHIRQSKLFSISLPNYLNFAFNYHYFCVIILTMYIPGLPHMYSHMLRQRKKYVTVPTAKPAKAD 218          
BLAST of Gcaud1317.t1 vs. uniprot
Match: R7QF60_CHOCR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF60_CHOCR)

HSP 1 Score: 248 bits (632), Expect = 1.970e-80
Identity = 128/205 (62.44%), Postives = 163/205 (79.51%), Query Frame = 0
Query:   13 MAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKKYVVAPAAKAAKTE 217
            M  GWSIVL+RLL+AL+    VY AV LPL + QTGAILE++H+L+GLVRA  +TT LQV+SRLMLVWG++D VP++R   + T+MVLAWSLTEIPRYLYF+V++  + +P  LT+LRYSTF+PLYPLGA SE  T+YAAL YI   +  +V +PNR NFAFDYY   +L+LV Y+PGLP+M++HMLRQRKKYVV+PA K  K +
Sbjct:    1 MTAGWSIVLLRLLRALISSEPVYPAVRLPLALSQTGAILEVVHALSGLVRASAATTLLQVSSRLMLVWGVLDLVPEVRLAPTVTSMVLAWSLTEIPRYLYFSVAAATTQIPPGLTWLRYSTFIPLYPLGAGSEAATLYAALPYIEAARPLSVYMPNRVNFAFDYYYMCVLVLVNYLPGLPYMFAHMLRQRKKYVVSPAEKLVKAQ 205          
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A1X6PAC8_PORUM (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAC8_PORUM)

HSP 1 Score: 192 bits (488), Expect = 3.120e-58
Identity = 106/226 (46.90%), Postives = 150/226 (66.37%), Query Frame = 0
Query:    1 MATRYLCMYNGAMAVGWSIVLMRLLQALVK----------RSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFK--LYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKKYV-VAPAAKA 213
            MA  YL +YN AM +GW+ VL RLL  +             + V+DAV  PL +FQTGA  EI+H+ TGLVR PV TT LQV+SRL L+W I+  +P +R   +  ++V AW+ TE+PRY ++ V +  + VP WL +LRYSTFLPLYPLGA SE   + AAL  +   +    ++++PNR+N AFD++V+   ++V+Y+PGLP MY+HM+RQR+K +  AP  +A
Sbjct:    5 MARGYLFVYNMAMCLGWAYVLGRLLVTVANPPPPPDPGYPHTPVWDAVEAPLKLFQTGAAAEILHAATGLVRTPVGTTALQVSSRLFLLWPILAGLPPVRGRAAVGSLVAAWAATEVPRYAFYAVGAAGAAVPRWLVWLRYSTFLPLYPLGAGSEVALIVAALPVVARARGAYLSLAMPNRWNVAFDFWVWCAFIIVMYVPGLPFMYTHMMRQRRKALGAAPKTRA 230          
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A7S3EME0_9RHOD (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EME0_9RHOD)

HSP 1 Score: 186 bits (471), Expect = 8.800e-56
Identity = 103/207 (49.76%), Postives = 137/207 (66.18%), Query Frame = 0
Query:    1 MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQ-IRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKKYV 206
            +A  YL +YN A A+GWS+VL  L+   V     + AV   L + QT A+LEI+H L GLVRA V +T LQV+SR+ ++W + DP    +   ++F TMVLAWSLTEIPRY YF +       P W+T+LRYS+F+PLYPLGA+SE   +Y  L  I++ + Y++ +PN  NFA D Y   I  L++YIPGLP MYSHM+ QR KYV
Sbjct:    3 LAKAYLFLYNTAAAIGWSLVLGNLIWG-VYADDAWSAVEWSLKISQTAAVLEILHCLLGLVRASVFSTILQVSSRIYILWVVADPFHDAVGQFLAFKTMVLAWSLTEIPRYAYFAIGQ-VQKPPKWMTWLRYSSFMPLYPLGAASEAACLYTVLPLIKEARPYSIYMPNTLNFALDSYFTSICSLLIYIPGLPFMYSHMIGQRAKYV 207          
BLAST of Gcaud1317.t1 vs. uniprot
Match: UPI001CF97F1F (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF97F1F)

HSP 1 Score: 184 bits (466), Expect = 4.860e-55
Identity = 96/202 (47.52%), Postives = 138/202 (68.32%), Query Frame = 0
Query:    5 YLCMYNGAMAVGWSIVLMRLLQALVK--RSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            YL +YN  + VGW  VL   ++ L      +VY AV  PL   QT A+LEI+H L GLVR+P++ T  Q++SRL + WGI+   PQ +++I  +++V++WS+TEI RY +F +     H P WL +LRYSTFL LYP G +SE   +Y AL YI+  +LY++ +PN++NF+FDY+   +L+L LY+PG PHMY++ML QRKK
Sbjct:   12 YLVVYNWTVFVGWCQVLYLAVKTLKDSGHENVYSAVEKPLQFAQTAAVLEILHGLVGLVRSPITATLPQISSRLYVTWGILWSFPQTQTHIIVSSLVISWSITEIIRYSFFGLKEAVGHTPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPYIKGSELYSIRMPNKWNFSFDYFYTALLVLGLYVPGSPHMYTYMLSQRKK 213          
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A2I0IE91_PUNGR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IE91_PUNGR)

HSP 1 Score: 181 bits (460), Expect = 3.920e-54
Identity = 96/202 (47.52%), Postives = 137/202 (67.82%), Query Frame = 0
Query:    5 YLCMYNGAMAVGWSIVLMRLLQALVK--RSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            YL +YN A+ VGW  VL+  ++ L +     VY AV  PL + QT A+LEIIH L GLVR+P++ T  Q++SRL L WGI+   P+ +++I  +++V++WS+TEI RY +F +       P WL +LRYSTFL LYP G +SE   +Y AL YI++ + Y + +PN++NF+FDYY   IL L +Y+PG PHMY +ML QRK+
Sbjct:   12 YLSVYNWAVFVGWLQVLVLAVKTLKESGHEQVYSAVERPLQLSQTAAVLEIIHGLVGLVRSPITATLPQISSRLYLTWGILYSFPETQNHILVSSLVISWSITEIIRYSFFGMKEALGFAPSWLLWLRYSTFLVLYPTGITSEVGLIYIALPYIKNSEKYCIRMPNKWNFSFDYYYAAILALGIYVPGSPHMYGYMLAQRKR 213          
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A2T7DR43_9POAL (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7DR43_9POAL)

HSP 1 Score: 181 bits (459), Expect = 5.550e-54
Identity = 104/204 (50.98%), Postives = 134/204 (65.69%), Query Frame = 0
Query:    5 YLCMYNGAMAVGWSIVLMRLLQALVKRSS----VYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            YL +YN  + VGW+ VL      LV R S    VY AV  PL   QT AI+EI+H L GLVR+PVS T  Q+ SRL L WGI+   P+ RS+I  TT+V++WS+TEI RY +F +       P WL +LRYSTF+ LYP G SSE   ++ AL YI+  + Y   LPNR+NF++DYY   IL L++YIPG PHM+++ML QRKK
Sbjct:   12 YLSVYNWVVFVGWAQVLYY--AVLVLRESGHEAVYAAVERPLQFAQTAAIMEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETRSHILVTTLVISWSITEIIRYSFFGMKEALGFTPSWLLWLRYSTFMVLYPTGISSEVGLIWIALPYIKASEKYCFRLPNRWNFSYDYYFTSILALMIYIPGSPHMFTYMLSQRKK 213          
BLAST of Gcaud1317.t1 vs. uniprot
Match: A0A7C8YJA4_OPUST (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YJA4_OPUST)

HSP 1 Score: 181 bits (459), Expect = 5.550e-54
Identity = 95/202 (47.03%), Postives = 138/202 (68.32%), Query Frame = 0
Query:    5 YLCMYNGAMAVGWSIVLMRLLQALVK--RSSVYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            YL +YN A+  GW+ VL   ++ L++     VY+AV  PL + QT A+LEIIH L GLVR+P+S T  Q+ SRL + WGI+   P+ R++   +++V++W++TEI RY +F +       P WL +LRYSTFL LYP G SSE   +Y AL YI++ + Y + +PN++NF+FDYY   +L+L +Y+PG PHMY++ML QRKK
Sbjct:   12 YLSIYNWAVFFGWAQVLYFAVKTLIESGHEHVYNAVEKPLLLAQTAAVLEIIHGLIGLVRSPISATLPQIGSRLYVTWGILYSFPETRTHFLVSSLVISWAITEIIRYSFFGLKEAFGSAPSWLQWLRYSTFLLLYPSGISSEVGLIYTALPYIKNSEKYCIRMPNKWNFSFDYYYAALLVLAIYVPGSPHMYTYMLGQRKK 213          
BLAST of Gcaud1317.t1 vs. uniprot
Match: H0XBF8_OTOGA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=40 Tax=Eutheria TaxID=9347 RepID=H0XBF8_OTOGA)

HSP 1 Score: 182 bits (461), Expect = 7.450e-54
Identity = 91/207 (43.96%), Postives = 141/207 (68.12%), Query Frame = 0
Query:    1 MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSS---VYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            +AT YL +YN  M  GW ++ + L++A + + S   +Y ++  PL  FQTGA+LEI+H   G+V + V  T+ QV SR+ L+W +   V +++S  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LTMYAAL ++R   LY++SLPN++NF+FDYY ++IL+++ YIP  P +Y HM+ QR+K
Sbjct:   37 LATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIVLYPMGVSGELLTMYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQRRK 242          
BLAST of Gcaud1317.t1 vs. uniprot
Match: UPI000B8CD6E1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD6E1)

HSP 1 Score: 181 bits (458), Expect = 7.860e-54
Identity = 100/203 (49.26%), Postives = 136/203 (67.00%), Query Frame = 0
Query:    5 YLCMYNGAMAVGWSIVLMRLLQALVKRSS---VYDAVCLPLNVFQTGAILEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVLAWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMYAALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLRQRKK 204
            YL +YN  + VGW+ VL   L+ L K S    VYDAV  PL   QT A+LEI+H L GLVR+PV  T  Q++SRL L WGI+   P++RS++  +++V++WS+TEI RY +F +       P WL +LRYSTFL LYP G SSE   +Y AL YI+    Y + +PN++NF+FDY+   IL L +Y+PG PHMY++ML QRK+
Sbjct:   12 YLTIYNWTVFVGWAQVLFLALKTL-KESGYEHVYDAVEKPLQFAQTAAVLEILHGLVGLVRSPVMATLPQISSRLYLTWGILWSFPEVRSHMIVSSLVISWSVTEIIRYSFFGMKEGLGSAPSWLLWLRYSTFLLLYPTGISSEVGLIYLALPYIKRSDKYCIRMPNKWNFSFDYFYAAILALGIYVPGSPHMYTYMLGQRKR 213          
The following BLAST results are available for this feature:
BLAST of Gcaud1317.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITC7_9FLOR1.570e-10166.36Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
R7QF60_CHOCR1.970e-8062.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A1X6PAC8_PORUM3.120e-5846.90Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S3EME0_9RHOD8.800e-5649.76Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001CF97F1F4.860e-5547.52very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2I0IE91_PUNGR3.920e-5447.52Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2T7DR43_9POAL5.550e-5450.98Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7C8YJA4_OPUST5.550e-5447.03Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
H0XBF8_OTOGA7.450e-5443.96Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI000B8CD6E17.860e-5449.26very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 46..206
e-value: 3.8E-59
score: 199.0
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 3..209
NoneNo IPR availablePANTHERPTHR11035:SF3VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASEcoord: 3..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 196..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 176..195
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 157..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..134
NoneNo IPR availableTMHMMTMhelixcoord: 176..195
NoneNo IPR availableTMHMMTMhelixcoord: 134..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_371_length_28318_cov_4.596486contigNODE_371_length_28318_cov_4.596486:10792..11445 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1317.t1Gcaud1317.t1Gracilaria caudata M_176_S67 malemRNANODE_371_length_28318_cov_4.596486 10792..11445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=218bp
MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAI
LEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVL
AWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMY
AALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLR
QRKKYVVAPAAKAAKTE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA