Gcaud9799.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9799.t1
Unique NameGcaud9799.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length383
Homology
BLAST of Gcaud9799.t1 vs. uniprot
Match: G2PDW9_STRV4 (Alginate_lyase domain-containing protein n=40 Tax=Streptomyces TaxID=1883 RepID=G2PDW9_STRV4)

HSP 1 Score: 112 bits (281), Expect = 5.100e-24
Identity = 86/304 (28.29%), Postives = 124/304 (40.79%), Query Frame = 0
Query:    1 MTDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFDSIVKEGVEPWLIYGAQALRIVSRLTDDVKYEVASCEVLYLMVEDGPRGEREIWSKQRV--GMDVWNL 302
            MTDRP + ++      LSL  Y     + A  A+ +LR WFV P T M PSL  AQ IP + DG+  G ID S   +GF   +          P W  SDH    +W  +    ++  D    E A  NNHG FYD+ V ++A    +      V R    +          R++ QI  DG Q  E+ R    HY  + L+A+  +  +    G  +   T P   A L+   +       G  PW  Y    LR             A+ ++++   + G R  R    K +   G D+W L
Sbjct:  144 MTDRPEVGKVFESAYELSLAWYYTGKRAYAEHAADILRTWFVTPATRMNPSLNHAQFIPCMYDGRSIGIIDFS---QGFTSLLDAAALLDTGAPGWSKSDHEGFRTWNKQFLDWLVNSDFGKEEGAAENNHGTFYDMQVAAIATAVGDRDRARQVLRDARTK----------RIDTQIAADGTQPQELERTRSFHYSTFNLVAYTRMAAIGKHVGVDLWHYTGP-GGANLFKAVDVLLPAATGAAPWP-YPELDLRA-----------YAASDIVHAAADAGDRKARAAVDKLQAPPGGDLWAL 421          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A836TW63_9BACT (Alginate_lyase domain-containing protein n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836TW63_9BACT)

HSP 1 Score: 110 bits (275), Expect = 1.900e-23
Identity = 86/253 (33.99%), Postives = 115/253 (45.45%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRG--RLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKM----GVRTSPLVKAALWTVRN-FDSI-VKEGVEPW 247
            DR  L  M+  V  L+   Y    E  A +A  LLR WF+DPQT M P LQFAQGIPG  +G+ SG ID + +G    D+I LL         W   D + L+ W  +    ++  D    E+   NNHG +YD+ VLSLAL   N  +   V+              RG  R+  QI+ DG Q  E+ R     Y +  L     L  LS   G  +    G     L +A  W V N  DS  ++  +EP+
Sbjct:  105 DRHALAAMLSAVNTLAAAFYFSEHEDFAESAGLLLRTWFIDPQTRMNPHLQFAQGIPGRCEGRGSGIIDTAQIGF-LIDSIGLLG----GAAAWTGQDQQALLDWMTQFLAWLLESDHGVEEAVQANNHGTWYDVQVLSLALFTRNEDVYRQVT-------------ARGAQRINAQIEADGAQPFELSRTKSLDYSVMNLTGLFDLADLSGHCGVDLWRHEGEGGRSLRRAVDWLVANGIDSEWIRPQIEPF 339          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A2V9HMI5_9BACT (Alginate_lyase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9HMI5_9BACT)

HSP 1 Score: 108 bits (269), Expect = 2.280e-22
Identity = 77/238 (32.35%), Postives = 113/238 (47.48%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHRE---GYGHYVLYALLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFD 237
            D   +++ +     L+L +Y F +ES A  A++LLR WF++P+T M  +L+F QG+PG   G+ +G I+   V  G  DAI     +      W P+D + +  WC      M+  D    E+A +NNHG +YD+ ++SLAL   +   TN  SR+L             R+E QI+ DG Q  E+ R    GY    L  LL    L LL    G              LW+ R+ D
Sbjct:  160 DHKYMDRAISATHTLALASYFFGEESYATHATELLRTWFLNPETRMNANLEFGQGVPGHNTGRGTGLIETRDV-YGLVDAIGFFAVSKS----WTPADQKGMEGWCARFLDWMLHSDKGKEEAAAKNNHGSYYDVQIVSLALFTGD---TNIASRVLQS-------VPERRIEIQIEPDGRQPLELERTKALGYSTMNLAGLLE---LGLLGENVGVD------------LWSFRSSD 367          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A7U9NSK0_9GAMM (Putative exported protein n=2 Tax=unclassified Pantoea TaxID=2630326 RepID=A0A7U9NSK0_9GAMM)

HSP 1 Score: 106 bits (265), Expect = 6.430e-22
Identity = 66/214 (30.84%), Postives = 107/214 (50.00%), Query Frame = 0
Query:    2 TDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAG 215
            +D  RL +   DV  L+L  Y   ++  A  A  L+R WF+DP + M P+L FAQG+PG+ DG+ +G +D  +      DA++LL       P W+ +D + +  W  +  H +    +  +E+A  NNHG +Y   +  +A      YL +N +  +    T      RG+++ QI  DG Q +E+ R    HY  + L A   L  L+ ++G
Sbjct:  119 SDGVRLARFSADVQALTLAWYFSGEQRYADKAQSLVRHWFIDPASRMNPNLNFAQGVPGIADGRHTGVLDGRYFATRVVDALQLL----RTSPGWQAADQQGVERWFRDYLHWLQHSPLAQQEAAAPNNHGSWYCTQLAGIAW-----YLGDNAA--VRAMVT----LARGKIDQQIRADGSQPYELARTRSFHYSYFNLQALTALAQLAQKSG 317          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A2E8H401_9BACT (Alginate lyase n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A2E8H401_9BACT)

HSP 1 Score: 105 bits (262), Expect = 1.150e-21
Identity = 70/188 (37.23%), Postives = 89/188 (47.34%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHR 190
            DR  L  MM  V  LS   Y    E  A  A  LLR WF+DPQT M P LQ+AQGIPG  DG+  G ID + +G    D++ LL  +      W  SD R L  W ++    +        E    NNHG +YD+ VLSLAL      +  +V+   +            RLE QI+ DG Q  E+ R
Sbjct:  104 DRHALAAMMSAVNTLSAAYYFTDHEDFAECAGLLLRTWFLDPQTRMNPHLQYAQGIPGRCDGRGIGIIDTAQIGF-LVDSVSLLGESTA----WTDSDQRLLTDWMSQFLEWLTGSAYGLEEKGQPNNHGTWYDVQVLSLALSTGRRDVAQDVADRATR-----------RLESQIEPDGTQPLELAR 275          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A2T3NW25_9GAMM (Alginate lyase n=2 Tax=Photobacterium sanctipauli TaxID=1342794 RepID=A0A2T3NW25_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 1.500e-21
Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 0
Query:    2 TDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKMGV 220
            TD  R+      V  L +  Y   DE  A  A+K+LR WF++P+T M P+L++AQ +PGV D + SG ID         DA+ LL    EA  HW   D++ + +W  E  + +I  +  + E    NNHG +    +  +A      YL  +    ++   T W      R+ +Q+D  G Q  E+ R    HY  + L A A+L  L    G KMG+
Sbjct:  149 TDSVRIGLFTRSVRALGVAYYFSGDEKYAEHAAKMLRHWFINPETRMNPNLRYAQAVPGVDDQRRSGMIDSRSFSDRLVDALSLL----EASEHWTEEDNKAMRAWLGEFLNWLITSEQGTAEQYAGNNHGTWMQAQIAGIAY-----YLGKDDIAKMAVANTKW------RIREQLDSKGSQPEELARTRGYHYSYFNLDAMAYLAQL----GDKMGI 348          
BLAST of Gcaud9799.t1 vs. uniprot
Match: UPI0016604116 (alginate lyase family protein n=1 Tax=Maribacter sp. ANRC-HE7 TaxID=2737171 RepID=UPI0016604116)

HSP 1 Score: 105 bits (261), Expect = 2.170e-21
Identity = 79/292 (27.05%), Postives = 127/292 (43.49%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKMGVRTS--------------PLVKAALWTVRNFDSIVKEGVEPWLIYGAQALRIVSRLTDDVKYEVASCEVLYLMVE 280
            DR RL  M   V  L+L  Y   D   A  A+ ++R WF+D  T M P LQFAQG+PGV +GK SG +D   +       I +L+ +P    +W   D  ++  W +E    +   ++  +E+  +NNHG +Y   V +LAL  +N  L    + +L+ Q  G           Q+D +G Q HE+ R     Y  Y L A   + ++  + G  M   T+              P+V    W   +   +    + P L+        +S+ +D   Y     + + ++VE
Sbjct:  123 DRRRLGAMAKGVKELTLAYYFSNDGRYAQKAASMVRTWFLDGDTRMNPHLQFAQGVPGVTNGKSSGILDGKSITSVVPGVIPILSKSP----YWNKEDTVKVKEWLSEYLRWLTESELGHKENDQKNNHGSWYKYQVATLALYLDNKALAKK-NVVLAQQSLG----------KQLDFEGKQIHELARTRSFFYSCYNLDALTRIAMVGDKVGMDMWNYTTKDNKGLSLAVDFLAPVVHGEAWQYTDIHGVDLSNLVPVLVR-------MSKRSDSKGYTGLLSKTIAILVE 392          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A3D2ZB76_9BACT (Alginate lyase (Fragment) n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2ZB76_9BACT)

HSP 1 Score: 100 bits (250), Expect = 7.430e-21
Identity = 79/234 (33.76%), Postives = 106/234 (45.30%), Query Frame = 0
Query:   22 YIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRG--RLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKM----GVRTSPLVKAALWTVRN-FDSI-VKEGVEPW 247
            Y    E  A +A  LLR WF+DPQT M P LQFAQGIPG  +G+  G ID + +G    D+I LL         W   D + L+ W  +    ++  D    E+   NNHG +YD+ VLSLAL   N  +   V+              RG  R+  QI+ DG Q  E+ R     Y +  L     L  LS   G  +    G     L +A  W V N  DS  ++  +EP+
Sbjct:    1 YFSEHEDFAESAGLLLRTWFIDPQTRMNPHLQFAQGIPGRCEGRGIGIIDTAQIGF-LIDSIGLLG----GAAAWTGQDQQALLDWMTQFLAWLLESDHGVEEAVQANNHGTWYDVQVLSLALFTRNEDVYRQVT-------------ARGAQRINAQIEADGAQPFELSRTKSLDYSVMNLTGLFDLADLSGHCGVDLWRHEGEGGRSLRRAVDWLVANGIDSEWIRPQIEPF 216          
BLAST of Gcaud9799.t1 vs. uniprot
Match: UPI0019D0CF7B (alginate lyase family protein n=1 Tax=Yeosuana marina TaxID=1565536 RepID=UPI0019D0CF7B)

HSP 1 Score: 103 bits (257), Expect = 7.800e-21
Identity = 68/239 (28.45%), Postives = 110/239 (46.03%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYALLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFDSIVK 241
            DR RL  M   V  LSL  Y   DE  A  A  ++  WF++P TLM P+L++AQ +PG  + +P+G +D   +     DAI LL+ +     +WK +   ++  W  +  + +   D+  + S  +NNHG +Y   V SLAL   N  L  N+  +               L++ ++ +G Q HE+ R     Y  + L A   + +L  + G  M    S   K+    ++    +VK
Sbjct:  136 DRKRLGFMGKGVWTLSLAYYFTNDEKYANKAISMIETWFLNPDTLMNPNLEYAQSVPGNPNKRPTGILDGRSIVMFIPDAINLLSVSN----NWKDNHKAKMTQWFTDYLNWLTESDLGIKGSLQKNNHGSWYKFQVASLALYLGNKPLARNMVELAEKS-----------LDEMLNNEGGQIHELARSRSFFYSCFNLQALISIAVLGDKVGIDMWQYESENKKSLSLAIQYLTPVVK 359          
BLAST of Gcaud9799.t1 vs. uniprot
Match: A0A2V8W759_9BACT (Alginate_lyase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8W759_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.010e-20
Identity = 62/188 (32.98%), Postives = 98/188 (52.13%), Query Frame = 0
Query:    3 DRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLPSLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSDHRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNYLTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHR 190
            D   +++M+     L+L  Y F  E+ AA A++LLR WF++P+T M P+L+FAQG+ G   G+ +G I+   + R   DAI LL         W  +D + +  WC +    M+       E+A +NNHG FYD+ V+SLAL ++   +  +V +    +          R+  QI+ DG Q  E+ R
Sbjct:  131 DHKNMDRMISVTHTLALSYYFFGVEAFAAHATELLRTWFLNPETRMNPNLEFAQGVRGFNTGRGTGLIETRDIYR-LVDAIGLL----RGSKSWTAADQKGMEDWCGKFLDWMMHSQNGKDEAAAKNNHGTFYDVQVVSLALFNDQIEIARSVLQAAREK----------RIAMQIEPDGRQPLELER 303          
The following BLAST results are available for this feature:
BLAST of Gcaud9799.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G2PDW9_STRV45.100e-2428.29Alginate_lyase domain-containing protein n=40 Tax=... [more]
A0A836TW63_9BACT1.900e-2333.99Alginate_lyase domain-containing protein n=1 Tax=C... [more]
A0A2V9HMI5_9BACT2.280e-2232.35Alginate_lyase domain-containing protein n=1 Tax=A... [more]
A0A7U9NSK0_9GAMM6.430e-2230.84Putative exported protein n=2 Tax=unclassified Pan... [more]
A0A2E8H401_9BACT1.150e-2137.23Alginate lyase n=1 Tax=Gemmatimonadaceae bacterium... [more]
A0A2T3NW25_9GAMM1.500e-2131.96Alginate lyase n=2 Tax=Photobacterium sanctipauli ... [more]
UPI00166041162.170e-2127.05alginate lyase family protein n=1 Tax=Maribacter s... [more]
A0A3D2ZB76_9BACT7.430e-2133.76Alginate lyase (Fragment) n=1 Tax=Candidatus Lates... [more]
UPI0019D0CF7B7.800e-2128.45alginate lyase family protein n=1 Tax=Yeosuana mar... [more]
A0A2V8W759_9BACT1.010e-2032.98Alginate_lyase domain-containing protein n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008397Alginate lyase domainPFAMPF05426Alginate_lyasecoord: 2..216
e-value: 4.9E-29
score: 101.7
IPR008929Chondroitin AC/alginate lyaseGENE3D1.50.10.100Chondroitin AC/alginate lyasecoord: 1..239
e-value: 3.5E-43
score: 149.9
IPR008929Chondroitin AC/alginate lyaseSUPERFAMILY48230Chondroitin AC/alginate lyasecoord: 6..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..352
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 353..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 375..382
NoneNo IPR availableTMHMMTMhelixcoord: 353..375

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_278_length_32496_cov_4.509582contigNODE_278_length_32496_cov_4.509582:29057..30205 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9799.t1Gcaud9799.t1Gracilaria caudata M_176_S67 malemRNANODE_278_length_32496_cov_4.509582 29057..30205 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MTDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLP
SLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSD
HRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNY
LTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYA
LLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFDSIVKEGVEPWLIY
GAQALRIVSRLTDDVKYEVASCEVLYLMVEDGPRGEREIWSKQRVGMDVW
NLVFPALHDAEACGAWVTSQPLTAIDLKVLDQRRQAQEVRTVFVAPFRQK
FRLASVLNSMILVIALLISARFWFSRRRRKRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008397Alginate_lyase_dom
IPR008929Chondroitin_lyas