Gcaud9799.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9799.t1
Unique Name	Gcaud9799.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_278_length_32496_cov_4.509582	contig	NODE_278_length_32496_cov_4.509582:29057..30205 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	653045.Strvi_3100
PFAMs	Alginate_lyase
Max annot lvl	201174\|Actinobacteria
Evalue	1.06e-23
EggNOG OGs	2DB8U@1\|root,2Z7SW@2\|Bacteria,2IA41@201174\|Actinobacteria
Description	Alginate lyase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9799	Gcaud9799	Gracilaria caudata M_176_S67 male	gene	NODE_278_length_32496_cov_4.509582 29057..30205 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9799.t1.stop1	Gcaud9799.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_278_length_32496_cov_4.509582 29057..29059 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9799.t1.CDS1	Gcaud9799.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_278_length_32496_cov_4.509582 29057..30205 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9799.t1.exon1	Gcaud9799.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_278_length_32496_cov_4.509582 29057..30205 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9799.t1.start1	Gcaud9799.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_278_length_32496_cov_4.509582 30203..30205 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9799.t1	Gcaud9799.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_278_length_32496_cov_4.509582 29057..30205 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_278_length_32496_cov_4.509582:29057..30205-
coding sequence from alignment at NODE_278_length_32496_cov_4.509582:29057..30205-

mRNA sequence

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=383bp
MTDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLP
SLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSD
HRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNY
LTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYA
LLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFDSIVKEGVEPWLIY
GAQALRIVSRLTDDVKYEVASCEVLYLMVEDGPRGEREIWSKQRVGMDVW
NLVFPALHDAEACGAWVTSQPLTAIDLKVLDQRRQAQEVRTVFVAPFRQK
FRLASVLNSMILVIALLISARFWFSRRRRKRK*

spliced messenger RNA

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:29057..30205- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACCGCCCACGCTTAGAGCAAATGATGCACGACGTCATGCGTCT
GTCGTTGTGCGCTTACATCTTCCGCGACGAATCCTCAGCTGCGGCTGCCT
CCAAATTGCTTCGGGCTTGGTTTGTTGATCCTCAAACTCTAATGCTTCCT
TCACTTCAATTTGCCCAGGGCATCCCAGGTGTCATAGATGGAAAGCCCTC
CGGTTGTATCGATCTCTCTTTTGTCGGTAGAGGCTTTGCTGATGCAATCC
GCCTGTTGACGTACACTCCGGAAGCGCGTCCACACTGGAAACCCTCTGAT
CATCGTCGTTTAATTTCGTGGTGCAACGAAATGGCACACGAGATGATTTT
TGACGATGTAGTTAGTCGTGAGTCTGCCATGCGTAACAATCATGGTCTCT
TTTACGACCTCACCGTGCTGTCCCTCGCACTGCTGGATGAGAACAACTAC
CTCACGAACAATGTTTCAAGGATGTTGTCACCACAATGCACTGGCTGGAA
CTGGTGTGTACGTGGGAGACTGGAAGATCAGATAGACGAAGATGGGGTCC
AAACGCACGAGATACATCGCGAAGGATATGGACATTACGTGCTGTACGCC
TTGCTGGCGCACGCGCACTTGTTTCTGCTATCAACTAGAGCAGGGGCGAA
GATGGGCGTTCGAACGAGCCCTCTTGTAAAGGCTGCTTTATGGACTGTAC
GGAACTTCGACAGCATAGTAAAAGAGGGTGTAGAACCTTGGCTCATTTAC
GGCGCTCAAGCTCTTCGAATTGTGTCGCGGTTGACAGATGATGTGAAGTA
CGAGGTGGCTTCCTGCGAGGTGCTGTATCTCATGGTCGAGGATGGGCCGC
GAGGAGAAAGAGAGATATGGAGCAAGCAAAGGGTAGGAATGGATGTTTGG
AACCTCGTGTTCCCTGCACTTCACGACGCCGAAGCGTGTGGCGCATGGGT
AACGTCACAACCGCTGACCGCCATCGATTTGAAGGTTCTTGATCAACGGC
GGCAAGCTCAAGAAGTAAGAACGGTATTTGTAGCGCCGTTTCGTCAAAAG
TTCCGACTAGCCTCTGTTTTGAATAGCATGATACTGGTTATTGCCCTTCT
CATCTCAGCTAGATTTTGGTTTTCTAGACGGCGTCGAAAGAGGAAATAA

protein sequence of Gcaud9799.t1

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MTDRPRLEQMMHDVMRLSLCAYIFRDESSAAAASKLLRAWFVDPQTLMLP
SLQFAQGIPGVIDGKPSGCIDLSFVGRGFADAIRLLTYTPEARPHWKPSD
HRRLISWCNEMAHEMIFDDVVSRESAMRNNHGLFYDLTVLSLALLDENNY
LTNNVSRMLSPQCTGWNWCVRGRLEDQIDEDGVQTHEIHREGYGHYVLYA
LLAHAHLFLLSTRAGAKMGVRTSPLVKAALWTVRNFDSIVKEGVEPWLIY
GAQALRIVSRLTDDVKYEVASCEVLYLMVEDGPRGEREIWSKQRVGMDVW
NLVFPALHDAEACGAWVTSQPLTAIDLKVLDQRRQAQEVRTVFVAPFRQK
FRLASVLNSMILVIALLISARFWFSRRRRKRK*

mRNA from alignment at NODE_278_length_32496_cov_4.509582:29057..30205-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:29057..30205- (Gracilaria caudata M_176_S67 male)
ATGACTGACCGCCCACGCTTAGAGCAAATGATGCACGACGTCATGCGTCT
GTCGTTGTGCGCTTACATCTTCCGCGACGAATCCTCAGCTGCGGCTGCCT
CCAAATTGCTTCGGGCTTGGTTTGTTGATCCTCAAACTCTAATGCTTCCT
TCACTTCAATTTGCCCAGGGCATCCCAGGTGTCATAGATGGAAAGCCCTC
CGGTTGTATCGATCTCTCTTTTGTCGGTAGAGGCTTTGCTGATGCAATCC
GCCTGTTGACGTACACTCCGGAAGCGCGTCCACACTGGAAACCCTCTGAT
CATCGTCGTTTAATTTCGTGGTGCAACGAAATGGCACACGAGATGATTTT
TGACGATGTAGTTAGTCGTGAGTCTGCCATGCGTAACAATCATGGTCTCT
TTTACGACCTCACCGTGCTGTCCCTCGCACTGCTGGATGAGAACAACTAC
CTCACGAACAATGTTTCAAGGATGTTGTCACCACAATGCACTGGCTGGAA
CTGGTGTGTACGTGGGAGACTGGAAGATCAGATAGACGAAGATGGGGTCC
AAACGCACGAGATACATCGCGAAGGATATGGACATTACGTGCTGTACGCC
TTGCTGGCGCACGCGCACTTGTTTCTGCTATCAACTAGAGCAGGGGCGAA
GATGGGCGTTCGAACGAGCCCTCTTGTAAAGGCTGCTTTATGGACTGTAC
GGAACTTCGACAGCATAGTAAAAGAGGGTGTAGAACCTTGGCTCATTTAC
GGCGCTCAAGCTCTTCGAATTGTGTCGCGGTTGACAGATGATGTGAAGTA
CGAGGTGGCTTCCTGCGAGGTGCTGTATCTCATGGTCGAGGATGGGCCGC
GAGGAGAAAGAGAGATATGGAGCAAGCAAAGGGTAGGAATGGATGTTTGG
AACCTCGTGTTCCCTGCACTTCACGACGCCGAAGCGTGTGGCGCATGGGT
AACGTCACAACCGCTGACCGCCATCGATTTGAAGGTTCTTGATCAACGGC
GGCAAGCTCAAGAAGTAAGAACGGTATTTGTAGCGCCGTTTCGTCAAAAG
TTCCGACTAGCCTCTGTTTTGAATAGCATGATACTGGTTATTGCCCTTCT
CATCTCAGCTAGATTTTGGTTTTCTAGACGGCGTCGAAAGAGGAAATAA

Coding sequence (CDS) from alignment at NODE_278_length_32496_cov_4.509582:29057..30205-

>Gcaud9799.t1 ID=Gcaud9799.t1|Name=Gcaud9799.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1149bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:29057..30205- (Gracilaria caudata M_176_S67 male)
ATGACTGACCGCCCACGCTTAGAGCAAATGATGCACGACGTCATGCGTCT
GTCGTTGTGCGCTTACATCTTCCGCGACGAATCCTCAGCTGCGGCTGCCT
CCAAATTGCTTCGGGCTTGGTTTGTTGATCCTCAAACTCTAATGCTTCCT
TCACTTCAATTTGCCCAGGGCATCCCAGGTGTCATAGATGGAAAGCCCTC
CGGTTGTATCGATCTCTCTTTTGTCGGTAGAGGCTTTGCTGATGCAATCC
GCCTGTTGACGTACACTCCGGAAGCGCGTCCACACTGGAAACCCTCTGAT
CATCGTCGTTTAATTTCGTGGTGCAACGAAATGGCACACGAGATGATTTT
TGACGATGTAGTTAGTCGTGAGTCTGCCATGCGTAACAATCATGGTCTCT
TTTACGACCTCACCGTGCTGTCCCTCGCACTGCTGGATGAGAACAACTAC
CTCACGAACAATGTTTCAAGGATGTTGTCACCACAATGCACTGGCTGGAA
CTGGTGTGTACGTGGGAGACTGGAAGATCAGATAGACGAAGATGGGGTCC
AAACGCACGAGATACATCGCGAAGGATATGGACATTACGTGCTGTACGCC
TTGCTGGCGCACGCGCACTTGTTTCTGCTATCAACTAGAGCAGGGGCGAA
GATGGGCGTTCGAACGAGCCCTCTTGTAAAGGCTGCTTTATGGACTGTAC
GGAACTTCGACAGCATAGTAAAAGAGGGTGTAGAACCTTGGCTCATTTAC
GGCGCTCAAGCTCTTCGAATTGTGTCGCGGTTGACAGATGATGTGAAGTA
CGAGGTGGCTTCCTGCGAGGTGCTGTATCTCATGGTCGAGGATGGGCCGC
GAGGAGAAAGAGAGATATGGAGCAAGCAAAGGGTAGGAATGGATGTTTGG
AACCTCGTGTTCCCTGCACTTCACGACGCCGAAGCGTGTGGCGCATGGGT
AACGTCACAACCGCTGACCGCCATCGATTTGAAGGTTCTTGATCAACGGC
GGCAAGCTCAAGAAGTAAGAACGGTATTTGTAGCGCCGTTTCGTCAAAAG
TTCCGACTAGCCTCTGTTTTGAATAGCATGATACTGGTTATTGCCCTTCT
CATCTCAGCTAGATTTTGGTTTTCTAGACGGCGTCGAAAGAGGAAATAA