Gcaud8565.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8565.t1
Unique NameGcaud8565.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Homology
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A2V3ISZ8_9FLOR (60S ribosomal protein L24 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISZ8_9FLOR)

HSP 1 Score: 264 bits (674), Expect = 5.750e-89
Identity = 134/144 (93.06%), Postives = 141/144 (97.92%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSKRGPAPTSKGVNKMPVAQRR 144
            MVVKT+LCNYSGFRIYPGHGRRYIR+DGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRK+SSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGM++KRGP P++KG  KMPVAQRR
Sbjct:    1 MVVKTDLCNYSGFRIYPGHGRRYIRIDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKMSSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMKTKRGPVPSAKGAQKMPVAQRR 144          
BLAST of Gcaud8565.t1 vs. uniprot
Match: R7Q3B7_CHOCR (Ribosomal protein L24 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3B7_CHOCR)

HSP 1 Score: 231 bits (590), Expect = 3.800e-76
Identity = 120/145 (82.76%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSK-RGPAPTSKGVNKMPVAQRR 144
            MVVKT+LC YSGFRIYPGHGRRYIR DGRQYVF+N+KSEASFHMKRK AKHSWTQLYRRLNKKG+QEETQRRR RRK+S+APKAVEGA LEVIKAKRNQRPEVRKAAR+AALKDIKERKK  + K R   P+ +G  KMPVAQRR
Sbjct:    1 MVVKTDLCFYSGFRIYPGHGRRYIRTDGRQYVFINSKSEASFHMKRKAAKHSWTQLYRRLNKKGIQEETQRRRNRRKVSAAPKAVEGAPLEVIKAKRNQRPEVRKAARDAALKDIKERKKAAKPKTRSQIPSGRGAKKMPVAQRR 145          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A7S0ZEW3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEW3_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 2.780e-48
Identity = 82/118 (69.49%), Postives = 99/118 (83.90%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKER 118
            MVVKTELC++SGF+IYPGHG R+IR+DG+ Y F+N KS AS  M+RK A  +WTQLYRRL+KKG  EE+ +RRTR + S+ PKAV GASLEVI+AKR Q+PEVRKAAREAALK+IK R
Sbjct:    1 MVVKTELCSFSGFKIYPGHGSRFIRLDGKHYTFLNGKSRASLVMRRKAANLNWTQLYRRLHKKGQTEESSKRRTRARRSTVPKAVVGASLEVIRAKREQKPEVRKAAREAALKEIKAR 118          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A1X6NYU8_PORUM (TRASH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYU8_PORUM)

HSP 1 Score: 159 bits (403), Expect = 1.230e-47
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSKR 126
            MVVKT++C YSGFRIYPGHG R+IRVDG+ YVF N+K EASFHMKRK AK  WT L+R+L+KKG QEE  RRR RR  +   K V GA L++IKA+R QRPE+RKAAR++ALK+ KER K  +++R
Sbjct:    1 MVVKTDVCQYSGFRIYPGHGSRFIRVDGKSYVFANSKCEASFHMKRKAAKRPWTVLFRKLHKKGAQEEITRRRARRARTVVTKPVVGAPLDIIKARRTQRPEMRKAARDSALKEAKERNKTKKAER 126          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A7S0EZX2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EZX2_9EUKA)

HSP 1 Score: 150 bits (379), Expect = 7.600e-44
Identity = 78/121 (64.46%), Postives = 100/121 (82.64%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISS-APKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKK 120
            MVVKTE+C+YSGFRIYPGHG +Y+R D + ++F+N KS++ FH K  P K +WT LYRR++KKG  E+TQ++ T+RK+S  APKAV GASLE+IK KRNQ+PEVR AAREAAL++IKER K
Sbjct:    1 MVVKTEVCSYSGFRIYPGHGIKYVRGDSKSFLFINRKSKSYFHQKFNPRKIAWTLLYRRMHKKGTLEDTQKK-TKRKVSKGAPKAVVGASLELIKQKRNQKPEVRAAAREAALREIKERAK 120          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A5J4Z255_PORPP (60S ribosomal protein L24 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z255_PORPP)

HSP 1 Score: 144 bits (364), Expect = 4.930e-42
Identity = 72/109 (66.06%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAARE 109
            MVVKTELC +SG+RIYPGHG R IRVDG+ ++F+NAKS ASF M+RK A  +WT LYRRL+KKGV E+  ++R R + ++APK +EGASLE IKAKR+Q+PEVRKAAR+
Sbjct:    1 MVVKTELCQFSGYRIYPGHGSRLIRVDGKTHIFLNAKSRASFLMRRKAANLNWTVLYRRLHKKGVTEDNSKKRVRARKATAPKPIEGASLEQIKAKRSQKPEVRKAARD 109          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A7J7IGT2_9RHOD (60S ribosomal protein L24 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGT2_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 7.510e-41
Identity = 69/119 (57.98%), Postives = 96/119 (80.67%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKR-NQRPEVRKAAREAALKDIKER 118
            MVV+T++CN+SGFRIYPGHG  ++R DG+ +VF + K ++SFHM+RKPA  +WT +YRRLN+KG +E+ ++R  RR + +  K VEGAS+EV++AKR +QRP+VR AAR AALK+IK R
Sbjct:    1 MVVRTQICNFSGFRIYPGHGSTFVRSDGKVFVFASLKCKSSFHMRRKPASLNWTYIYRRLNRKGQEEQEKKRTRRRAVKTVQKPVEGASIEVLRAKRQSQRPQVRTAARAAALKEIKTR 119          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A7S0BMS9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMS9_9RHOD)

HSP 1 Score: 142 bits (358), Expect = 8.120e-41
Identity = 77/131 (58.78%), Postives = 98/131 (74.81%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAA-LKDIKERKKGMRSKRGPAP 130
            MVVKTE+CN+SGF+IYPGHG R+ R D + + F+N KS+A   MKRKP K +WTQLYRR+NKKG QEET +RR R+  +   K VEGASLEVIKAKRNQ+   +    +AA L++IK RK G ++K+G AP
Sbjct:    1 MVVKTEVCNFSGFKIYPGHGSRFARSDEKVFNFINGKSKACQKMKRKPVKLNWTQLYRRVNKKGAQEETVKRRARKVNTVVMKPVEGASLEVIKAKRNQQQRSKATGAKAANLREIKARKAGGKTKKGGAP 131          
BLAST of Gcaud8565.t1 vs. uniprot
Match: A0A3B4XA74_SERLL (Uncharacterized protein n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4XA74_SERLL)

HSP 1 Score: 140 bits (352), Expect = 7.920e-40
Identity = 71/129 (55.04%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQRPEVRKAAREAALKDIKERKKGMRSKRGPA 129
            MVVKT++C YSG RIYPGHG  Y+R D + + F+N KS++ F  +  P K +WTQLYRR++KKG  EE+ R++TR+   +  KAV G +L+VIKAKR+Q+PEVR AAREAAL++IKER K  +++  PA
Sbjct:    1 MVVKTDVCAYSGLRIYPGHGIFYVRADQKSFKFINRKSKSQFLQRLNPRKIAWTQLYRRMHKKGTMEESTRKKTRKVSKTTNKAVVGMTLDVIKAKRSQKPEVRAAAREAALREIKERNKAKQARAHPA 129          
BLAST of Gcaud8565.t1 vs. uniprot
Match: M1VC66_CYAM1 (60S ribosomal protein L24 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VC66_CYAM1)

HSP 1 Score: 139 bits (350), Expect = 1.070e-39
Identity = 68/122 (55.74%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    1 MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAKHSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQ-RPEVRKAAREAALKDIKERKKG 121
            MVV+T++CN+SGFRIYPGHG  ++R DG+ +VF N+K ++SFHM+RKPA  +WT +YRRL++KG +E+ +RR  RR + +  K VEGAS+EV++AKR   R +V+ AAR AALK+IK R++G
Sbjct:    1 MVVRTQICNFSGFRIYPGHGSTFVRSDGKVFVFANSKCKSSFHMRRKPASLNWTYIYRRLHRKGQEEQEKRRTRRRAVKTVQKPVEGASIEVLRAKRQAPRAQVKTAARAAALKEIKARQQG 122          
The following BLAST results are available for this feature:
BLAST of Gcaud8565.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISZ8_9FLOR5.750e-8993.0660S ribosomal protein L24 n=1 Tax=Gracilariopsis c... [more]
R7Q3B7_CHOCR3.800e-7682.76Ribosomal protein L24 n=1 Tax=Chondrus crispus Tax... [more]
A0A7S0ZEW3_9RHOD2.780e-4869.49Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NYU8_PORUM1.230e-4764.29TRASH domain-containing protein n=1 Tax=Porphyra u... [more]
A0A7S0EZX2_9EUKA7.600e-4464.46Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A5J4Z255_PORPP4.930e-4266.0660S ribosomal protein L24 n=1 Tax=Porphyridium pur... [more]
A0A7J7IGT2_9RHOD7.510e-4157.9860S ribosomal protein L24 n=1 Tax=Cyanidiococcus y... [more]
A0A7S0BMS9_9RHOD8.120e-4158.78Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A3B4XA74_SERLL7.920e-4055.04Uncharacterized protein n=1 Tax=Seriola lalandi do... [more]
M1VC66_CYAM11.070e-3955.7460S ribosomal protein L24 n=1 Tax=Cyanidioschyzon ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.250.1270coord: 69..134
e-value: 3.4E-17
score: 64.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..84
NoneNo IPR availablePANTHERPTHR10792:SF160S RIBOSOMAL PROTEIN L24coord: 4..126
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 6..58
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 4..68
e-value: 1.2E-26
score: 92.7
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 4..126
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 3..56
e-value: 1.12536E-20
score: 77.6126
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20Ribosomal protein L24ecoord: 3..65
e-value: 1.7E-25
score: 91.1
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 10..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:25517..26123 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1Gcaud8565.t1Gracilaria caudata M_176_S67 malemRNANODE_15_length_84509_cov_4.337096 25517..26123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRGPAPTSKGVNKMPVAQRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf
IPR023442Ribosomal_L24e_CS