Gcaud8565.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8565.t1
Unique NameGcaud8565.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:25517..26123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002586263.1
Preferred nameRPL24
PFAMsRibosomal_L24e
Max annot lvl33208|Metazoa
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000027,GO:0000075,GO:0000184,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0000956,GO:0001654,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0007049,GO:0007093,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010458,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0021545,GO:0021554,GO:0021675,GO:0022008,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031290,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042330,GO:0042788,GO:0042886,GO:0043009,GO:0043010,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045047,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048285,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0060041,GO:0060255,GO:0061564,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902626,GO:1903047,GO:1990904
Evalue2.32e-39
EggNOG OGsCOG2075@1|root,KOG1722@2759|Eukaryota,3A053@33154|Opisthokonta,3BEV7@33208|Metazoa,3D1AP@33213|Bilateria,486P8@7711|Chordata
Descriptionassembly of large subunit precursor of preribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8565Gcaud8565Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 25517..26123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1Gcaud8565.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 25517..26123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1.stop1Gcaud8565.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 25517..25519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1.CDS1Gcaud8565.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 25517..25940 -
Gcaud8565.t1.CDS2Gcaud8565.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 26113..26123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1.exon1Gcaud8565.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 25517..25940 -
Gcaud8565.t1.exon2Gcaud8565.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 26113..26123 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1.intron1Gcaud8565.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_15_length_84509_cov_4.337096 25941..26112 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8565.t1.start1Gcaud8565.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 26121..26123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRGPAPTSKGVNKMPVAQRR*
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spliced messenger RNA

>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:25517..26123- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCAAAACCGAGCTTTGTAACTACTCCGGTTTCCGCATCTATCC
GGGACACGGTCGTCGCTACATCCGTGTGGACGGGCGTCAATATGTCTTTG
TCAATGCCAAGTCCGAGGCGTCGTTCCACATGAAGCGCAAGCCCGCCAAG
CACTCATGGACGCAGCTGTACCGCCGCCTCAACAAGAAGGGCGTGCAAGA
GGAGACGCAGCGCCGCCGCACCCGCAGAAAGATCTCATCGGCGCCGAAGG
CCGTTGAGGGTGCCTCTCTTGAGGTGATCAAGGCGAAGCGCAATCAGCGC
CCGGAGGTGCGAAAGGCTGCGCGTGAGGCCGCCCTCAAAGATATCAAGGA
GAGGAAGAAGGGTATGCGATCGAAGCGTGGTCCTGCTCCTACGTCAAAGG
GCGTCAACAAAATGCCCGTAGCGCAACGTCGTTAA
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protein sequence of Gcaud8565.t1

>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRGPAPTSKGVNKMPVAQRR*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:25517..26123-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=607bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:25517..26123- (Gracilaria caudata M_176_S67 male)
ATGGTCGTCAAGTAAGTTGTTTGCAGATATATAGCGAGTTACTTTACGCA
TACGCGAACATTTCCATCTGAGCGCGCGTGCCCTAGACAGCGCGATCCCT
CCGTCGCGATCTGCGTTTTCCGCGTTGAAACAAATGCATTTGCGCTAACC
GCGTCCCGCCATCCCCCTCCCCTCCGCGAACAGAACCGAGCTTTGTAACT
ACTCCGGTTTCCGCATCTATCCGGGACACGGTCGTCGCTACATCCGTGTG
GACGGGCGTCAATATGTCTTTGTCAATGCCAAGTCCGAGGCGTCGTTCCA
CATGAAGCGCAAGCCCGCCAAGCACTCATGGACGCAGCTGTACCGCCGCC
TCAACAAGAAGGGCGTGCAAGAGGAGACGCAGCGCCGCCGCACCCGCAGA
AAGATCTCATCGGCGCCGAAGGCCGTTGAGGGTGCCTCTCTTGAGGTGAT
CAAGGCGAAGCGCAATCAGCGCCCGGAGGTGCGAAAGGCTGCGCGTGAGG
CCGCCCTCAAAGATATCAAGGAGAGGAAGAAGGGTATGCGATCGAAGCGT
GGTCCTGCTCCTACGTCAAAGGGCGTCAACAAAATGCCCGTAGCGCAACG
TCGTTAA
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:25517..26123-

>Gcaud8565.t1 ID=Gcaud8565.t1|Name=Gcaud8565.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=435bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:25517..26123- (Gracilaria caudata M_176_S67 male)
ATGGTCGTCAAAACCGAGCTTTGTAACTACTCCGGTTTCCGCATCTATCC
GGGACACGGTCGTCGCTACATCCGTGTGGACGGGCGTCAATATGTCTTTG
TCAATGCCAAGTCCGAGGCGTCGTTCCACATGAAGCGCAAGCCCGCCAAG
CACTCATGGACGCAGCTGTACCGCCGCCTCAACAAGAAGGGCGTGCAAGA
GGAGACGCAGCGCCGCCGCACCCGCAGAAAGATCTCATCGGCGCCGAAGG
CCGTTGAGGGTGCCTCTCTTGAGGTGATCAAGGCGAAGCGCAATCAGCGC
CCGGAGGTGCGAAAGGCTGCGCGTGAGGCCGCCCTCAAAGATATCAAGGA
GAGGAAGAAGGGTATGCGATCGAAGCGTGGTCCTGCTCCTACGTCAAAGG
GCGTCAACAAAATGCCCGTAGCGCAACGTCGTTAA
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