Gcaud8564.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8564.t1
Unique NameGcaud8564.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Homology
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BLAST of Gcaud8564.t1 vs. uniprot
Match: A0A2V3IRW3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRW3_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 2.660e-46
Identity = 104/236 (44.07%), Postives = 135/236 (57.20%), Query Frame = 0 
Query:    1 MPPRRVNVFARSDGSCLHDVVWQPPSDHRFPAA----QHPQPTQITADKIWPIIHNFMSLSREVD-GGPLRRLVFRNPQHYAPTVRKFDPVVTQPEKHIAPVVIHILSDTRFVVTVTEQLPDYSLFDQ----SPYSSA---FTLAEFCETILHLLRSEHAAFVAAQSNNTPQHSDDANASATAQPSVTSRDSAVHSADSQEAGPKQVQEDVDTLRTIVQQSQIAQMIDNTMNLVQL 224
            MP RR+NVFAR DG+ LHDV+      HR P A      P+P+Q++A  IWPI+HNF +LSRE+D    LRRLVFR+PQ YAP V  F   V     H  P+VIH L    FVVTVTE LP+++LFDQ    SP SS+   FTL++FC+TI+H +  E+ AF AA  N    H+D    +                            + V TLR +++QS++ +MI NTM LVQL
Sbjct:    1 MPTRRINVFARVDGTVLHDVL------HRTPTAPTEQSSPKPSQVSAQTIWPIVHNFFALSRELDRAASLRRLVFRDPQQYAPPVSNFHTAVRPNRNHTPPIVIHCLQRAPFVVTVTETLPNFTLFDQQHHHSPLSSSSTEFTLSDFCDTIMHFVHKEYDAFSAA--NRAEAHAD----AQLXXXXXXXXXXXXXXXXXXXXXXXXADQAVQTLRQVIEQSKLTEMIHNTMQLVQL 224
The following BLAST results are available for this feature:
BLAST of Gcaud8564.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRW3_9FLOR2.660e-4644.07Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:24748..25452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1Gcaud8564.t1Gracilaria caudata M_176_S67 malemRNANODE_15_length_84509_cov_4.337096 24748..25452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MPPRRVNVFARSDGSCLHDVVWQPPSDHRFPAAQHPQPTQITADKIWPII
HNFMSLSREVDGGPLRRLVFRNPQHYAPTVRKFDPVVTQPEKHIAPVVIH
ILSDTRFVVTVTEQLPDYSLFDQSPYSSAFTLAEFCETILHLLRSEHAAF
VAAQSNNTPQHSDDANASATAQPSVTSRDSAVHSADSQEAGPKQVQEDVD
TLRTIVQQSQIAQMIDNTMNLVQLSTKPSTENVS*
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