Gcaud8564.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8564.t1
Unique NameGcaud8564.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:24748..25452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8564Gcaud8564Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 24748..25452 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1.start1Gcaud8564.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 24748..24750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1.CDS1Gcaud8564.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 24748..25452 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1.exon1Gcaud8564.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 24748..25452 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1.stop1Gcaud8564.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 25450..25452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8564.t1Gcaud8564.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 24748..25452 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MPPRRVNVFARSDGSCLHDVVWQPPSDHRFPAAQHPQPTQITADKIWPII
HNFMSLSREVDGGPLRRLVFRNPQHYAPTVRKFDPVVTQPEKHIAPVVIH
ILSDTRFVVTVTEQLPDYSLFDQSPYSSAFTLAEFCETILHLLRSEHAAF
VAAQSNNTPQHSDDANASATAQPSVTSRDSAVHSADSQEAGPKQVQEDVD
TLRTIVQQSQIAQMIDNTMNLVQLSTKPSTENVS*
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spliced messenger RNA

>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:24748..25452+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCCGTCGCGTCAACGTCTTCGCGCGTTCCGACGGCTCCTGTCT
GCACGACGTCGTCTGGCAGCCCCCCTCCGACCACCGTTTCCCCGCCGCTC
AGCACCCGCAGCCCACACAAATCACCGCTGACAAGATCTGGCCCATCATC
CACAACTTCATGAGTCTGTCACGAGAAGTGGACGGCGGCCCGCTCCGTCG
CCTCGTGTTCCGCAATCCACAGCACTACGCGCCCACCGTCAGAAAGTTCG
ATCCCGTCGTCACACAGCCCGAGAAGCACATTGCTCCCGTCGTCATACAC
ATTCTGTCTGATACTCGCTTCGTTGTCACTGTCACCGAGCAATTGCCCGA
TTACAGCCTGTTCGATCAATCACCGTATTCTTCAGCGTTCACTCTTGCCG
AGTTTTGCGAGACTATCCTACATCTATTGCGAAGCGAACACGCTGCTTTT
GTGGCCGCTCAGTCGAATAACACGCCGCAACACAGCGACGACGCGAACGC
CTCGGCCACAGCACAGCCGTCTGTAACATCGCGTGATTCCGCGGTGCATA
GTGCAGACTCGCAGGAAGCTGGCCCTAAGCAAGTGCAAGAAGACGTGGAC
ACTCTACGCACAATCGTGCAACAAAGCCAAATAGCTCAAATGATTGACAA
CACAATGAACCTGGTGCAATTGTCAACCAAGCCAAGCACAGAAAACGTGT
CATGA
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protein sequence of Gcaud8564.t1

>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MPPRRVNVFARSDGSCLHDVVWQPPSDHRFPAAQHPQPTQITADKIWPII
HNFMSLSREVDGGPLRRLVFRNPQHYAPTVRKFDPVVTQPEKHIAPVVIH
ILSDTRFVVTVTEQLPDYSLFDQSPYSSAFTLAEFCETILHLLRSEHAAF
VAAQSNNTPQHSDDANASATAQPSVTSRDSAVHSADSQEAGPKQVQEDVD
TLRTIVQQSQIAQMIDNTMNLVQLSTKPSTENVS*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:24748..25452+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:24748..25452+ (Gracilaria caudata M_176_S67 male)
ATGCCTCCCCGTCGCGTCAACGTCTTCGCGCGTTCCGACGGCTCCTGTCT
GCACGACGTCGTCTGGCAGCCCCCCTCCGACCACCGTTTCCCCGCCGCTC
AGCACCCGCAGCCCACACAAATCACCGCTGACAAGATCTGGCCCATCATC
CACAACTTCATGAGTCTGTCACGAGAAGTGGACGGCGGCCCGCTCCGTCG
CCTCGTGTTCCGCAATCCACAGCACTACGCGCCCACCGTCAGAAAGTTCG
ATCCCGTCGTCACACAGCCCGAGAAGCACATTGCTCCCGTCGTCATACAC
ATTCTGTCTGATACTCGCTTCGTTGTCACTGTCACCGAGCAATTGCCCGA
TTACAGCCTGTTCGATCAATCACCGTATTCTTCAGCGTTCACTCTTGCCG
AGTTTTGCGAGACTATCCTACATCTATTGCGAAGCGAACACGCTGCTTTT
GTGGCCGCTCAGTCGAATAACACGCCGCAACACAGCGACGACGCGAACGC
CTCGGCCACAGCACAGCCGTCTGTAACATCGCGTGATTCCGCGGTGCATA
GTGCAGACTCGCAGGAAGCTGGCCCTAAGCAAGTGCAAGAAGACGTGGAC
ACTCTACGCACAATCGTGCAACAAAGCCAAATAGCTCAAATGATTGACAA
CACAATGAACCTGGTGCAATTGTCAACCAAGCCAAGCACAGAAAACGTGT
CATGA
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:24748..25452+

>Gcaud8564.t1 ID=Gcaud8564.t1|Name=Gcaud8564.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:24748..25452+ (Gracilaria caudata M_176_S67 male)
ATGCCTCCCCGTCGCGTCAACGTCTTCGCGCGTTCCGACGGCTCCTGTCT
GCACGACGTCGTCTGGCAGCCCCCCTCCGACCACCGTTTCCCCGCCGCTC
AGCACCCGCAGCCCACACAAATCACCGCTGACAAGATCTGGCCCATCATC
CACAACTTCATGAGTCTGTCACGAGAAGTGGACGGCGGCCCGCTCCGTCG
CCTCGTGTTCCGCAATCCACAGCACTACGCGCCCACCGTCAGAAAGTTCG
ATCCCGTCGTCACACAGCCCGAGAAGCACATTGCTCCCGTCGTCATACAC
ATTCTGTCTGATACTCGCTTCGTTGTCACTGTCACCGAGCAATTGCCCGA
TTACAGCCTGTTCGATCAATCACCGTATTCTTCAGCGTTCACTCTTGCCG
AGTTTTGCGAGACTATCCTACATCTATTGCGAAGCGAACACGCTGCTTTT
GTGGCCGCTCAGTCGAATAACACGCCGCAACACAGCGACGACGCGAACGC
CTCGGCCACAGCACAGCCGTCTGTAACATCGCGTGATTCCGCGGTGCATA
GTGCAGACTCGCAGGAAGCTGGCCCTAAGCAAGTGCAAGAAGACGTGGAC
ACTCTACGCACAATCGTGCAACAAAGCCAAATAGCTCAAATGATTGACAA
CACAATGAACCTGGTGCAATTGTCAACCAAGCCAAGCACAGAAAACGTGT
CATGA
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