Gcaud8482.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8482.t1
Unique NameGcaud8482.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Homology
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A2V3IQ53_9FLOR (RING-H2 finger protein ATL48 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ53_9FLOR)

HSP 1 Score: 75.5 bits (184), Expect = 2.650e-15
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = 0
Query:   38 PSFDAALPAPRDFSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVLGASVARTQNA 113
            P     LP  RD S  RKNPLV  GAL T  VL  GLLAF  GN RLSQ+MMR RV+AQ ATL  L ASVA  ++A
Sbjct:   41 PFIAPELPPRRDLSQFRKNPLVAGGALFTGGVLLAGLLAFHRGNQRLSQSMMRLRVIAQGATLAALAASVATPRHA 116          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A1B0EUC2_GLOMM (HIG1 domain-containing protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0EUC2_GLOMM)

HSP 1 Score: 64.3 bits (155), Expect = 4.230e-11
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0
Query:   19 ILTRAPEH-----DYDELADSDVTPSFDAALPAPRDFSLLRK---NPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVLGASVARTQN 112
            + +++P+H     D D +   + T S   A P      ++RK   NPLVP G LATA+ LG GL  FR GN R+SQ MMRAR++AQ  T+  L   V  T N
Sbjct:    1 MASKSPQHINLNEDLDWIKLREETGS---AFPETTKEKMMRKIKENPLVPIGCLATASALGFGLYNFRTGNRRMSQMMMRARIIAQGFTVAALVVGVVMTYN 99          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A443NF44_9MAGN (RING-H2 finger protein ATL48-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NF44_9MAGN)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-10
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   55 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVL 103
            KNPLVP GAL TA VL  GL++FR GN+RL Q +MRARV+AQ AT+ ++
Sbjct:   22 KNPLVPLGALVTAGVLTAGLISFRQGNSRLGQKLMRARVVAQGATVALM 70          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A6J1AZC7_9ROSI (RING-H2 finger protein ATL48-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1AZC7_9ROSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.460e-10
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   55 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVL 103
            +NPLVP GAL TA VL  GL++FR GN+RL Q +MRARV+ Q AT+G++
Sbjct:   19 RNPLVPVGALITAGVLTAGLISFRLGNSRLGQVLMRARVVVQGATVGLM 67          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A852PC43_9PASS (HIG2A protein (Fragment) n=1 Tax=Atrichornis clamosus TaxID=449594 RepID=A0A852PC43_9PASS)

HSP 1 Score: 62.8 bits (151), Expect = 1.810e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   54 RKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVL 103
            R+NPLVP G L T  VLG GLL+FR GNTR SQ MMRAR++AQ  T   L
Sbjct:   43 RENPLVPLGCLCTVGVLGYGLLSFRKGNTRRSQLMMRARIVAQGFTFAAL 92          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A8C4W2R4_9SAUR (HIG1 domain-containing protein n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4W2R4_9SAUR)

HSP 1 Score: 62.4 bits (150), Expect = 1.920e-10
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   37 TPSFDAALPAPRDFSLL--RKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVLGASVARTQNAAQ 115
            +PS  ++ P  RD  L   R+NPLVP G L+TA  L  GL+ F+ GNTR SQ MMRARV+AQ  T+  +   V  T   AQ
Sbjct:   12 SPSSSSSPPGFRDKFLRKSRENPLVPIGCLSTAGALTYGLICFQKGNTRQSQLMMRARVLAQGFTIAAIMVGVVATAMKAQ 92          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A067DFC7_CITSI (HIG1 domain-containing protein n=5 Tax=Citrus TaxID=2706 RepID=A0A067DFC7_CITSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.150e-10
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   45 PAPRDFSLLRK---NPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVL 103
            P   DFS  +K   NPLVP GAL TA VL  GL++FR GN+ L Q +MRARV+ Q AT+G++
Sbjct:    9 PTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLM 70          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A5J5AMF9_9ASTE (HIG1 domain-containing protein n=2 Tax=asterids TaxID=71274 RepID=A0A5J5AMF9_9ASTE)

HSP 1 Score: 61.2 bits (147), Expect = 4.030e-10
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   55 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVL 103
            KNP VP GAL TA VL  GL++FR GN+RL QT+MRARV+ Q AT+ ++
Sbjct:   22 KNPFVPIGALITAGVLTAGLISFRQGNSRLGQTLMRARVVVQGATVALM 70          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A0L0BNR6_LUCCU (HIG1 domain-containing protein n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0BNR6_LUCCU)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-10
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0
Query:   53 LRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLGVLGASVART 110
            +++NPLVP G LATA+ LG GL  FR GN ++SQ MMRAR++AQ  T+  L   V  T
Sbjct:   38 IKENPLVPIGCLATASALGFGLYNFRTGNRKMSQMMMRARILAQGFTVAALVTGVVMT 95          
BLAST of Gcaud8482.t1 vs. uniprot
Match: A0A7L3K1F9_9PASS (HIG2A protein (Fragment) n=1 Tax=Drymodes brunneopygia TaxID=626378 RepID=A0A7L3K1F9_9PASS)

HSP 1 Score: 61.6 bits (148), Expect = 5.110e-10
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   54 RKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATLG-VLGASVA 108
            R+NPLVP G L T +VL  GLL FR GNTR SQ MMRARV+AQ  T   +LG +VA
Sbjct:   43 RENPLVPLGCLCTVSVLAYGLLCFRKGNTRRSQLMMRARVVAQGFTFAALLGGTVA 98          
The following BLAST results are available for this feature:
BLAST of Gcaud8482.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ53_9FLOR2.650e-1559.21RING-H2 finger protein ATL48 n=1 Tax=Gracilariopsi... [more]
A0A1B0EUC2_GLOMM4.230e-1142.16HIG1 domain-containing protein n=6 Tax=Glossina Ta... [more]
A0A443NF44_9MAGN1.420e-1063.27RING-H2 finger protein ATL48-like protein n=1 Tax=... [more]
A0A6J1AZC7_9ROSI1.460e-1061.22RING-H2 finger protein ATL48-like n=1 Tax=Herrania... [more]
A0A852PC43_9PASS1.810e-1064.00HIG2A protein (Fragment) n=1 Tax=Atrichornis clamo... [more]
A0A8C4W2R4_9SAUR1.920e-1048.15HIG1 domain-containing protein n=1 Tax=Gopherus ev... [more]
A0A067DFC7_CITSI3.150e-1054.84HIG1 domain-containing protein n=5 Tax=Citrus TaxI... [more]
A0A5J5AMF9_9ASTE4.030e-1061.22HIG1 domain-containing protein n=2 Tax=asterids Ta... [more]
A0A0L0BNR6_LUCCU4.540e-1053.45HIG1 domain-containing protein n=1 Tax=Lucilia cup... [more]
A0A7L3K1F9_9PASS5.110e-1062.50HIG2A protein (Fragment) n=1 Tax=Drymodes brunneop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 55..105
e-value: 1.5E-17
score: 63.5
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 30..115
score: 20.358683
NoneNo IPR availableGENE3D6.10.140.1320coord: 56..112
e-value: 5.6E-15
score: 56.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR12297HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATEDcoord: 53..113
NoneNo IPR availablePANTHERPTHR12297:SF3HIG1 DOMAIN FAMILY MEMBER 2Acoord: 53..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..57
NoneNo IPR availableTMHMMTMhelixcoord: 58..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1141_length_13362_cov_4.300354contigNODE_1141_length_13362_cov_4.300354:131..478 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1Gcaud8482.t1Gracilaria caudata M_176_S67 malemRNANODE_1141_length_13362_cov_4.300354 131..478 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MGADHAEESAAAERPSRIILTRAPEHDYDELADSDVTPSFDAALPAPRDF
SLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATL
GVLGASVARTQNAAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain