Gcaud8482.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8482.t1
Unique NameGcaud8482.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1141_length_13362_cov_4.300354contigNODE_1141_length_13362_cov_4.300354:131..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006476743.1
PFAMsHIG_1_N
Max annot lvl35493|Streptophyta
Evalue1.09e-10
EggNOG OGsKOG4431@1|root,KOG4431@2759|Eukaryota,37W5X@33090|Viridiplantae,3GK82@35493|Streptophyta
DescriptionRING-H2 finger protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8482Gcaud8482Gracilaria caudata M_176_S67 malegeneNODE_1141_length_13362_cov_4.300354 131..478 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1.stop1Gcaud8482.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1141_length_13362_cov_4.300354 131..133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1.CDS1Gcaud8482.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1141_length_13362_cov_4.300354 131..478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1.exon1Gcaud8482.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1141_length_13362_cov_4.300354 131..478 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1.start1Gcaud8482.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1141_length_13362_cov_4.300354 476..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8482.t1Gcaud8482.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1141_length_13362_cov_4.300354 131..478 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MGADHAEESAAAERPSRIILTRAPEHDYDELADSDVTPSFDAALPAPRDF
SLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATL
GVLGASVARTQNAAQ*
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spliced messenger RNA

>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:131..478- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCGATCACGCCGAGGAGAGCGCCGCCGCTGAGCGCCCGTCGCG
CATCATCCTCACGCGCGCGCCCGAGCACGACTACGATGAGCTTGCGGACA
GTGACGTGACGCCATCGTTCGACGCGGCGCTGCCGGCGCCGCGCGACTTC
TCGCTGCTGCGCAAGAACCCGCTGGTGCCGGCCGGCGCGCTGGCCACGGC
CGCCGTGCTGGGCGTGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCC
TGTCGCAGACGATGATGCGCGCGCGCGTGATGGCGCAGGCGGCCACGCTC
GGCGTGCTGGGTGCGTCAGTGGCGCGCACGCAAAACGCTGCGCAATAA
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protein sequence of Gcaud8482.t1

>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MGADHAEESAAAERPSRIILTRAPEHDYDELADSDVTPSFDAALPAPRDF
SLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVMAQAATL
GVLGASVARTQNAAQ*
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mRNA from alignment at NODE_1141_length_13362_cov_4.300354:131..478-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:131..478- (Gracilaria caudata M_176_S67 male)
ATGGGAGCCGATCACGCCGAGGAGAGCGCCGCCGCTGAGCGCCCGTCGCG
CATCATCCTCACGCGCGCGCCCGAGCACGACTACGATGAGCTTGCGGACA
GTGACGTGACGCCATCGTTCGACGCGGCGCTGCCGGCGCCGCGCGACTTC
TCGCTGCTGCGCAAGAACCCGCTGGTGCCGGCCGGCGCGCTGGCCACGGC
CGCCGTGCTGGGCGTGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCC
TGTCGCAGACGATGATGCGCGCGCGCGTGATGGCGCAGGCGGCCACGCTC
GGCGTGCTGGGTGCGTCAGTGGCGCGCACGCAAAACGCTGCGCAATAA
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Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:131..478-

>Gcaud8482.t1 ID=Gcaud8482.t1|Name=Gcaud8482.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:131..478- (Gracilaria caudata M_176_S67 male)
ATGGGAGCCGATCACGCCGAGGAGAGCGCCGCCGCTGAGCGCCCGTCGCG
CATCATCCTCACGCGCGCGCCCGAGCACGACTACGATGAGCTTGCGGACA
GTGACGTGACGCCATCGTTCGACGCGGCGCTGCCGGCGCCGCGCGACTTC
TCGCTGCTGCGCAAGAACCCGCTGGTGCCGGCCGGCGCGCTGGCCACGGC
CGCCGTGCTGGGCGTGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCC
TGTCGCAGACGATGATGCGCGCGCGCGTGATGGCGCAGGCGGCCACGCTC
GGCGTGCTGGGTGCGTCAGTGGCGCGCACGCAAAACGCTGCGCAATAA
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