Gcaud8444.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8444.t1
Unique NameGcaud8444.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Homology
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A2V3ILG7_9FLOR (Putative ATP-dependent RNA helicase ddx52 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILG7_9FLOR)

HSP 1 Score: 241 bits (616), Expect = 6.250e-75
Identity = 123/167 (73.65%), Postives = 143/167 (85.63%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            M D+KRVTVGAS YG SFAVDEAV HI+QRFV VG + EQGKVMAVRNL+R+G++ PVL+FVQ+KERAA LFREL+YDGVHVDAIH+DRT AAR +AV RFR G  WVLIATDVL+RGLDFLAV+ VINYD+PSS+A YVH I R  RNG+ G A++LFTEED KL+
Sbjct:  259 MNDMKRVTVGASAYGGSFAVDEAVKHIEQRFVFVGGRAEQGKVMAVRNLLRNGVQAPVLLFVQSKERAAQLFRELLYDGVHVDAIHSDRTVAARETAVQRFREGNTWVLIATDVLSRGLDFLAVRTVINYDVPSSAAAYVHRIGRCGRNGRHGVALSLFTEEDLKLI 425          
BLAST of Gcaud8444.t1 vs. uniprot
Match: R7QFR3_CHOCR (DEAD (Asp-Glu-Ala-Asp) box polypeptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR3_CHOCR)

HSP 1 Score: 200 bits (508), Expect = 2.260e-58
Identity = 99/167 (59.28%), Postives = 129/167 (77.25%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            +K  K++ +    YG S AV    + I+Q+F+ VG +GEQGKVMAVR L+++G++ P+L+FVQTK+RAA+L+REL+YDGV V+AIHADR+  AR  AV RFR G++WVLIATDVLARGLDFLAV+ V+NYDMPSS++ YVH I RT        AVTLFTEED+ L+
Sbjct:  285 LKKQKKIVIDGGAYGGSAAVGGVAARIEQKFMFVGGRGEQGKVMAVRGLLKEGLRAPILLFVQTKDRAAELYRELVYDGVKVEAIHADRSQQARMRAVERFRTGEVWVLIATDVLARGLDFLAVESVVNYDMPSSASAYVHRIGRTXXXXXXXTAVTLFTEEDRVLL 451          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A8C5SKF0_LATLA (RNA helicase n=3 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SKF0_LATLA)

HSP 1 Score: 164 bits (416), Expect = 3.330e-46
Identity = 84/149 (56.38%), Postives = 108/149 (72.48%), Query Frame = 0
Query:   19 AVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            A + AV  +DQ  + VG   E GK++A+RNL++ G  PPVLVFVQ+ ERA +LF EL+Y+G++VD IHADRT   R + V  FRAGKIWVLI T +LARG+DF  V MVIN+D PSS+  Y+H I RT R G +G A+T FTE+DK L+
Sbjct:  197 ARNAAVETVDQELIFVGS--ETGKLLAMRNLVKKGFTPPVLVFVQSIERAKELFHELVYEGINVDVIHADRTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINFDFPSSAVEYIHRIGRTGRAGHTGKAITFFTEDDKPLL 343          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A833ZKX7_9CHIR (DExD-box helicase 52 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A833ZKX7_9CHIR)

HSP 1 Score: 162 bits (409), Expect = 3.930e-46
Identity = 88/167 (52.69%), Postives = 113/167 (67.66%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            + +V  V++GA         + AV  ++Q  + VG   E GK++A+R LI+ G  PPVLVFVQ+ ERA +LF ELIY+G++VD IHADRT   R + V  FRAGKIWVLI T +LARG+DF  V +VINYD P+SS  Y+H I RT R G  G AVT FTE+DK L+
Sbjct:   78 LDNVITVSIGAR--------NSAVETVEQELLFVGS--ETGKLLAMRELIKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQEQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 234          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A7S3A9B4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9B4_9RHOD)

HSP 1 Score: 167 bits (422), Expect = 7.740e-46
Identity = 82/167 (49.10%), Postives = 117/167 (70.06%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            MK   ++ VG   YG   A  +A S + QRF+    +GE GKV A R L+ +G+ PP LVFVQ+++RA+ LF+EL++DGV++DAIHA+RTAA R++AV  FR+G++W+LIATD++ARG+DF  +  V+NYD+P+S   YVH I R         A+T FTE+DK L+
Sbjct:  304 MKTPVKIIVGGQSYGGGTAAVDA-STVKQRFMFADGQGEAGKVAAFRRLLTEGLMPPTLVFVQSQDRASQLFKELVFDGVNIDAIHANRTAAQRSTAVENFRSGRVWILIATDLMARGIDFRTINTVVNYDLPASPIAYVHRIGRXXXXXXXXQAITFFTEDDKPLL 469          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A250XAM3_9CHLO (RNA helicase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAM3_9CHLO)

HSP 1 Score: 166 bits (421), Expect = 7.850e-46
Identity = 86/158 (54.43%), Postives = 115/158 (72.78%), Query Frame = 0
Query:    6 RVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEED 163
            RVTVG          + A S ++QR + VG   E GK+MA+R LI++G+KPP LVFV +K+RA  L REL+YDGVHVD+IH++++AAARA+AV  FR G+ W+LIATD++ RG+DF+ V+ V+NYD P S+A Y+H I RT R  + G AVT FTEED
Sbjct:  327 RVTVGVR--------NSAASSVNQRLLFVGR--EAGKLMALRQLIKEGVKPPTLVFVGSKDRAKSLHRELMYDGVHVDSIHSEQSAAARAAAVDNFRLGRTWILIATDLIGRGMDFVGVKTVVNYDFPHSTADYIHRIGRTGRADQQGEAVTFFTEED 474          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A8C0HK14_CHEAB (DExD-box helicase 52 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0HK14_CHEAB)

HSP 1 Score: 160 bits (405), Expect = 1.960e-45
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = 0
Query:   19 AVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            A + A   +DQ  + VG   E GK++A+R+L++ G  PPVLVFVQ+ ERA +LF ELIY+G++VD IHAD+T   R + V  FRAGKIWVLI T +LARG+DF  V MVINYD P+S+  Y+H I RT R G +G AVT FTE+DK L+
Sbjct:  144 ARNAAAETVDQELLFVGS--ETGKLLAMRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLL 290          
BLAST of Gcaud8444.t1 vs. uniprot
Match: UPI0005D02283 (probable ATP-dependent RNA helicase DDX52 isoform X2 n=1 Tax=Homo sapiens TaxID=9606 RepID=UPI0005D02283)

HSP 1 Score: 161 bits (407), Expect = 2.780e-45
Identity = 86/167 (51.50%), Postives = 113/167 (67.66%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            + +V  V++GA         + AV  ++Q  + VG   E GK++AVR L++ G  PPVLVFVQ+ ERA +LF ELIY+G++VD IHA+RT   R + V  FRAGKIWVLI T +LARG+DF  V +VINYD P+SS  Y+H I RT R G  G A+T FTE+DK L+
Sbjct:  128 LDNVISVSIGAR--------NSAVETVEQELLFVGS--ETGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 284          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A2D4GCY5_MICCO (RNA helicase (Fragment) n=2 Tax=Elapidae TaxID=8602 RepID=A0A2D4GCY5_MICCO)

HSP 1 Score: 160 bits (405), Expect = 5.030e-45
Identity = 82/149 (55.03%), Postives = 107/149 (71.81%), Query Frame = 0
Query:   19 AVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            A + AV  +DQ  + VG   E GK++A+R+L++ G  PP LVFVQ+ ERA +LF EL+Y+G++VD IHADRT   R + V  FRAGKIWVLI T +LARG+DF  V MVIN+D PSS+  Y+H I RT R G +G A+T FTE+DK L+
Sbjct:  206 ARNAAVETVDQELLFVGS--ETGKLLAMRDLVKKGFTPPALVFVQSIERAKELFHELVYEGINVDVIHADRTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINFDFPSSAVEYIHRIGRTGRAGHTGKAITFFTEDDKPLL 352          
BLAST of Gcaud8444.t1 vs. uniprot
Match: A0A8C0HHM4_CHEAB (DExD-box helicase 52 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0HHM4_CHEAB)

HSP 1 Score: 160 bits (405), Expect = 1.170e-44
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = 0
Query:   19 AVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNGKSGNAVTLFTEEDKKLV 167
            A + A   +DQ  + VG   E GK++A+R+L++ G  PPVLVFVQ+ ERA +LF ELIY+G++VD IHAD+T   R + V  FRAGKIWVLI T +LARG+DF  V MVINYD P+S+  Y+H I RT R G +G AVT FTE+DK L+
Sbjct:  187 ARNAAAETVDQELLFVGS--ETGKLLAMRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLL 333          
The following BLAST results are available for this feature:
BLAST of Gcaud8444.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILG7_9FLOR6.250e-7573.65Putative ATP-dependent RNA helicase ddx52 n=1 Tax=... [more]
R7QFR3_CHOCR2.260e-5859.28DEAD (Asp-Glu-Ala-Asp) box polypeptide n=1 Tax=Cho... [more]
A0A8C5SKF0_LATLA3.330e-4656.38RNA helicase n=3 Tax=Laticauda laticaudata TaxID=8... [more]
A0A833ZKX7_9CHIR3.930e-4652.69DExD-box helicase 52 n=1 Tax=Phyllostomus discolor... [more]
A0A7S3A9B4_9RHOD7.740e-4649.10Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A250XAM3_9CHLO7.850e-4654.43RNA helicase n=1 Tax=Chlamydomonas eustigma TaxID=... [more]
A0A8C0HK14_CHEAB1.960e-4555.70DExD-box helicase 52 n=1 Tax=Chelonoidis abingdoni... [more]
UPI0005D022832.780e-4551.50probable ATP-dependent RNA helicase DDX52 isoform ... [more]
A0A2D4GCY5_MICCO5.030e-4555.03RNA helicase (Fragment) n=2 Tax=Elapidae TaxID=860... [more]
A0A8C0HHM4_CHEAB1.170e-4455.70DExD-box helicase 52 n=1 Tax=Chelonoidis abingdoni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 66..150
e-value: 1.3E-19
score: 81.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 46..150
e-value: 4.1E-23
score: 81.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 26..170
score: 17.589638
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 17..170
e-value: 1.6E-41
score: 143.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 25..166
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 21..167
NoneNo IPR availablePANTHERPTHR24031:SF594ATP-DEPENDENT RNA HELICASE DDX52-RELATEDcoord: 21..167
NoneNo IPR availableCDDcd18787SF2_C_DEADcoord: 27..159
e-value: 6.61046E-34
score: 114.527

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1595_length_9579_cov_4.835687contigNODE_1595_length_9579_cov_4.835687:8037..8549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8444.t1Gcaud8444.t1Gracilaria caudata M_176_S67 malemRNANODE_1595_length_9579_cov_4.835687 8037..8549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLI
RDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVAR
FRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNG
KSGNAVTLFTEEDKKLVSGW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase