Gcaud8444.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8444.t1
Unique Name	Gcaud8444.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1595_length_9579_cov_4.835687	contig	NODE_1595_length_9579_cov_4.835687:8037..8549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109478.XP_005858582.1
Preferred name	DDX52
PFAMs	DEAD,Helicase_C
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14779
GOs	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Evalue	1.55e-45
EggNOG OGs	KOG0344@1\|root,KOG0344@2759\|Eukaryota,38DA6@33154\|Opisthokonta,3BAWW@33208\|Metazoa,3CUIV@33213\|Bilateria,48712@7711\|Chordata,492ZQ@7742\|Vertebrata,3JEZR@40674\|Mammalia,4KWW8@9397\|Chiroptera
EC	3.6.4.13
Description	ATP-dependent RNA helicase DDX52
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8444	Gcaud8444	Gracilaria caudata M_176_S67 male	gene	NODE_1595_length_9579_cov_4.835687 8037..8549 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8444.t1.start1	Gcaud8444.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1595_length_9579_cov_4.835687 8037..8039 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8444.t1.CDS1	Gcaud8444.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1595_length_9579_cov_4.835687 8037..8549 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8444.t1.exon1	Gcaud8444.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1595_length_9579_cov_4.835687 8037..8549 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8444.t1.stop1	Gcaud8444.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1595_length_9579_cov_4.835687 8547..8549 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8444.t1	Gcaud8444.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1595_length_9579_cov_4.835687 8037..8549 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+
coding sequence from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+

mRNA sequence

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLI
RDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVAR
FRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNG
KSGNAVTLFTEEDKKLVSGW*

spliced messenger RNA

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaaggacgTCAAAAGGGTGACGGTAGGAGCGAGCGGCTATGGCGTATC
GTTTGCTGTGGATGAGGCGGTGAGTCATATTGATCAGCGATTCGTGTCTG
TGGGCGAAAAAGGCGAACAGGGAAAGGTGATGGCGGTACGAAACTTGATT
CGAGACGGCATCAAACCCCCTGTTTTGGTGTTCGTTCAGACCAAGGAGCG
CGCGGCCGATTTGTTTCGCGAGCTAATTTACGACGGCGTACATGTGGATG
CCATTCACGCCGACCGCACTGCGGCGGCGAGAGCGTCGGCAGTAGCCAGA
TTTCGCGCTGGCAAGATTTGGGTGTTGATCGCCACTGACGTGCTCGCGAG
AGGACTAGACTTTCTGGCAGTGCAGATGGTGATCAACTACGACATGCCGT
CGTCTTCCGCGCCTTATGTGCATAGTATCGAACGCACGGAGAGGAATGGA
AAGTCAGGAAATGCTGTGACGCTGTTCACTGAGGAGGATAAGAAATTGGT
GTCGGGGTGGTGA

protein sequence of Gcaud8444.t1

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MKDVKRVTVGASGYGVSFAVDEAVSHIDQRFVSVGEKGEQGKVMAVRNLI
RDGIKPPVLVFVQTKERAADLFRELIYDGVHVDAIHADRTAAARASAVAR
FRAGKIWVLIATDVLARGLDFLAVQMVINYDMPSSSAPYVHSIERTERNG
KSGNAVTLFTEEDKKLVSGW*

mRNA from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+ (Gracilaria caudata M_176_S67 male)
atgaaggacgTCAAAAGGGTGACGGTAGGAGCGAGCGGCTATGGCGTATC
GTTTGCTGTGGATGAGGCGGTGAGTCATATTGATCAGCGATTCGTGTCTG
TGGGCGAAAAAGGCGAACAGGGAAAGGTGATGGCGGTACGAAACTTGATT
CGAGACGGCATCAAACCCCCTGTTTTGGTGTTCGTTCAGACCAAGGAGCG
CGCGGCCGATTTGTTTCGCGAGCTAATTTACGACGGCGTACATGTGGATG
CCATTCACGCCGACCGCACTGCGGCGGCGAGAGCGTCGGCAGTAGCCAGA
TTTCGCGCTGGCAAGATTTGGGTGTTGATCGCCACTGACGTGCTCGCGAG
AGGACTAGACTTTCTGGCAGTGCAGATGGTGATCAACTACGACATGCCGT
CGTCTTCCGCGCCTTATGTGCATAGTATCGAACGCACGGAGAGGAATGGA
AAGTCAGGAAATGCTGTGACGCTGTTCACTGAGGAGGATAAGAAATTGGT
GTCGGGGTGGTGA

Coding sequence (CDS) from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+

>Gcaud8444.t1 ID=Gcaud8444.t1|Name=Gcaud8444.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:8037..8549+ (Gracilaria caudata M_176_S67 male)
atgaaggacgTCAAAAGGGTGACGGTAGGAGCGAGCGGCTATGGCGTATC
GTTTGCTGTGGATGAGGCGGTGAGTCATATTGATCAGCGATTCGTGTCTG
TGGGCGAAAAAGGCGAACAGGGAAAGGTGATGGCGGTACGAAACTTGATT
CGAGACGGCATCAAACCCCCTGTTTTGGTGTTCGTTCAGACCAAGGAGCG
CGCGGCCGATTTGTTTCGCGAGCTAATTTACGACGGCGTACATGTGGATG
CCATTCACGCCGACCGCACTGCGGCGGCGAGAGCGTCGGCAGTAGCCAGA
TTTCGCGCTGGCAAGATTTGGGTGTTGATCGCCACTGACGTGCTCGCGAG
AGGACTAGACTTTCTGGCAGTGCAGATGGTGATCAACTACGACATGCCGT
CGTCTTCCGCGCCTTATGTGCATAGTATCGAACGCACGGAGAGGAATGGA
AAGTCAGGAAATGCTGTGACGCTGTTCACTGAGGAGGATAAGAAATTGGT
GTCGGGGTGGTGA