Gcaud8439.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8439.t1
Unique NameGcaud8439.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length247
Homology
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A2V3J399_9FLOR (ATP-binding cassette sub-family D member 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J399_9FLOR)

HSP 1 Score: 333 bits (853), Expect = 5.200e-107
Identity = 167/215 (77.67%), Postives = 187/215 (86.98%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVLT-GPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M+PGKLVVA E + +SS++ +A+N++SPDGT+LCE LS ++ERG HVLT GPNGCGKSSLFRVLAGL PVYGGTI RPARSRIFYVPQRPYLALGTLR+NVTYPMTW +A A GATDE I  LLERV L D ARR  GLDAV DWAEVLSGGQKQRL F+RLLFHAPQ+AIL+EASS VSID+E+ LY AVKE GITVISVSHRPSLW FHD+VL
Sbjct:  457 MQPGKLVVAAEHDEQSSLKVDAINLLSPDGTLLCERLSFEIERGCHVLTTGPNGCGKSSLFRVLAGLWPVYGGTIFRPARSRIFYVPQRPYLALGTLRDNVTYPMTWEQACANGATDEAITSLLERVCLDDVARRLGGLDAVKDWAEVLSGGQKQRLGFSRLLFHAPQYAILDEASSAVSIDIEEVLYRAVKEAGITVISVSHRPSLWRFHDKVL 671          
BLAST of Gcaud8439.t1 vs. uniprot
Match: R7QFQ6_CHOCR (ATP-binding cassette, sub-family D (ALD), member 3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFQ6_CHOCR)

HSP 1 Score: 309 bits (791), Expect = 1.210e-97
Identity = 156/218 (71.56%), Postives = 184/218 (84.40%), Query Frame = 0
Query:    1 MRPGKLVVADEDE--RESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVLT-GPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEA-RARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M PG+L+V  EDE   ++ VRF  VN++SPD T+L E L+ ++ RG HVLT GPNG GKSSLFRVLAGL P+YGGT+ RP+RSRIFYVPQRPYLALGTLRENVTYPMTW EA + +GATD+LI++LLE VHLGD  RR+ GLDAV DWAEVLSGGQKQRL F+RLLFH P +AIL+EASS VSIDVE+ LY++VK+ GIT+ISVSHRPSLW FHD+VL
Sbjct:  462 MIPGELIVGSEDEGPEKNVVRFSGVNLLSPDCTILAENLTFEIPRGCHVLTTGPNGSGKSSLFRVLAGLWPLYGGTLHRPSRSRIFYVPQRPYLALGTLRENVTYPMTWTEAVQQKGATDDLIIELLEMVHLGDITRRKGGLDAVQDWAEVLSGGQKQRLGFSRLLFHKPDYAILDEASSAVSIDVEQLLYQSVKDCGITLISVSHRPSLWSFHDKVL 679          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7S0BEY8_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEY8_9RHOD)

HSP 1 Score: 280 bits (717), Expect = 4.550e-90
Identity = 137/216 (63.43%), Postives = 174/216 (80.56%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEA-RARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M+PG L+V DED  E  V+F+ VN++SPD TVLC+ L+ ++  G +VL +GPNGCGKSSLFRVLAGL P+YGGT++RP  S+ FYVPQRPYLALGTLR+ VTYP+TW EA R +GATDE I++LL  VHL + A+R+ GLD   DWA+VLSGGQKQRLA  RL FH P++AIL+E +S VS+DVE  +Y   KE+GIT+I+VSHRPSLW+FH++VL
Sbjct:  147 MKPGVLIVGDEDNYECPVKFDHVNLISPDRTVLCQNLTFEIPHGVNVLISGPNGCGKSSLFRVLAGLWPLYGGTLTRPTSSQQFYVPQRPYLALGTLRDQVTYPLTWLEAKRIKGATDEKIIELLNEVHLEEIAKRKGGLDVECDWADVLSGGQKQRLAMARLFFHRPKYAILDECTSAVSLDVEGFMYARAKELGITLITVSHRPSLWKFHEKVL 362          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7S3A428_9RHOD (Probable ATP-dependent transporter ycf16 n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A428_9RHOD)

HSP 1 Score: 283 bits (724), Expect = 1.140e-87
Identity = 138/216 (63.89%), Postives = 176/216 (81.48%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEA-RARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M+PG L+V DED  E  V+F+ VN++SPD TVLC+GL+ ++ +G +VL +GPNGCGKSSLFRVLAGL P+YGGT++RP  S+ FYVPQRPYLALGTLR+ VTYP+TW EA R +GATDE I++LL  V LG+ A+R+ GLD   DWA+VLSGGQKQRLA  RL FH P++AIL+E +S VS+DVE  +Y   KE+GIT+I+VSHRPSLW+FH++VL
Sbjct:  456 MKPGVLIVGDEDNLECPVKFDHVNLISPDRTVLCKGLTFEIPQGVNVLISGPNGCGKSSLFRVLAGLWPLYGGTLTRPTSSQQFYVPQRPYLALGTLRDQVTYPLTWLEAKRIKGATDETIIELLNEVRLGEIAKRKGGLDVECDWADVLSGGQKQRLAMARLFFHRPKYAILDECTSAVSLDVEGFMYTRAKELGITLITVSHRPSLWKFHEKVL 671          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7S0ZH65_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZH65_9RHOD)

HSP 1 Score: 260 bits (664), Expect = 2.850e-78
Identity = 128/215 (59.53%), Postives = 167/215 (77.67%), Query Frame = 0
Query:    2 RPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARAR-GATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            +PG+L+V  ++     +RF  VNIVSPD T+LC  LS+++ RG++VL TGPNGCGKSS FRVLAG+ P+Y GT++RP+  R+FYVPQRPYLALGTLR+ VTYP+TW +A  R  ATDE++  LLE VHL D A R+ GLDA  DW+EVLSGG+KQR+  +RL FH P  A+L+E +S VS+DVE  LY   K +GIT+I+VSHRPSLW+FH+++L
Sbjct:  486 KPGRLIVGGDN----LIRFVDVNIVSPDRTLLCRNLSIEIRRGTNVLITGPNGCGKSSTFRVLAGIWPLYHGTLTRPSSDRLFYVPQRPYLALGTLRDQVTYPLTWSDAVERHNATDEMMWNLLEEVHLKDLAIRKGGLDAELDWSEVLSGGEKQRVGMSRLFFHRPAFAVLDECTSAVSLDVEGFLYTRAKHLGITLITVSHRPSLWQFHEKLL 696          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7S1XES6_9RHOD (Probable ATP-dependent transporter ycf16 n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XES6_9RHOD)

HSP 1 Score: 254 bits (649), Expect = 8.670e-77
Identity = 126/216 (58.33%), Postives = 169/216 (78.24%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARA-RGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M+PG+LV+  +      +RFE VNIVSPD T+L E LS ++ RG+++L TGPNGCGKSS FRVLAGL P+YGG ++RP  +R FYVPQRPYLALGTLR+ VTYP+ W EA+  +GATDE+++QLLE V+L + A+R+ GLDA +DW++VLSGG+KQRLA  RL FH P  AIL+E +S VS+DVE  LY   KE+G ++I++SHR S+W+ H+++L
Sbjct:  449 MKPGELVIGSDH----LIRFEHVNIVSPDRTILVEDLSFEICRGTNLLITGPNGCGKSSSFRVLAGLWPLYGGKLTRPDAARTFYVPQRPYLALGTLRDQVTYPLVWREAQGEKGATDEMLLQLLEDVYLSEVAKRKGGLDAEHDWSDVLSGGEKQRLAMARLFFHRPAFAILDECTSAVSMDVEDFLYTRAKELGTSLITISHRFSIWKHHEKLL 660          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7V5I717_9BACT (ATP-binding cassette domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I717_9BACT)

HSP 1 Score: 255 bits (651), Expect = 1.890e-76
Identity = 128/215 (59.53%), Postives = 165/215 (76.74%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M PG+LV     +    VRFE VNIVSPD  +L + L+ ++  G++VL TGPNGCGKSSLFRVL GL P+YGGT+ RP RSR+FY+PQRPYLA+G+LRE V YPMT  E R+R   DE + +LL+ VHLG+ +RRR+G D V DW++VLSGG+KQRLA  RL FH PQ+A+L+E +S VS+DVE  LY   +E+GIT+I+VSHRPSLW FH+++L
Sbjct:  534 MVPGRLV-----DNVDFVRFEHVNIVSPDRILLAKDLTFEVPPGTNVLITGPNGCGKSSLFRVLCGLWPLYGGTLYRPPRSRMFYIPQRPYLAIGSLREQVIYPMTTLEMRSRNIRDEDLQKLLDEVHLGELSRRRNGWDNVCDWSDVLSGGEKQRLAMARLFFHRPQYAVLDECTSAVSLDVEGYLYTHARELGITLITVSHRPSLWRFHEKLL 743          
BLAST of Gcaud8439.t1 vs. uniprot
Match: M2XY28_GALSU (Probable ATP-dependent transporter ycf16 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY28_GALSU)

HSP 1 Score: 254 bits (649), Expect = 4.990e-76
Identity = 122/213 (57.28%), Postives = 164/213 (77.00%), Query Frame = 0
Query:    3 PGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            PGK++      R   +RFE VNI+SPD T+LC  L+L++ +G++VL TGPNGCGKSSLFRVLAGL P+YG T+ RP  S+IFYVPQRPYLALGTLR+ + YP+T  EA  RG TD+++ +LL  V+L +   R+ GLDAV DW++VLSGG+KQR+A  RL +H P +A+L+E +S VS+DVE  LYE+ K+  IT+++VSHRPSLW FH+++L
Sbjct:  505 PGKVI------RNDMIRFEHVNIISPDRTILCRDLNLEVPQGTNVLITGPNGCGKSSLFRVLAGLWPLYGKTLYRPEPSKIFYVPQRPYLALGTLRDQIIYPLTKEEAEERGCTDDMLRKLLHDVYLDEVGNRKGGLDAVCDWSDVLSGGEKQRIAMARLFYHQPMYAVLDECTSAVSLDVEGHLYESAKKRNITLLTVSHRPSLWRFHEKIL 711          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A7J7IG11_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG11_9RHOD)

HSP 1 Score: 251 bits (642), Expect = 4.280e-75
Identity = 127/215 (59.07%), Postives = 162/215 (75.35%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M PG+LV     +    VRFE VNIVSPD  +L + L  ++  G++VL TGPNGCGKSSLFRVL GL P+YGGT+ RP R R+FY+PQRPYLA+G+LRE V YPMT  E R R   DE + +LL+ VHLG+ +RRR+G D V DW++VLSGG+KQRLA  RL FH PQ+A+L+E +S VS+DVE  LY   +E+GIT+I+VSHRPSLW FH+++L
Sbjct:  540 MVPGRLV-----DNVDYVRFEHVNIVSPDRILLAKDLCFEVPPGTNVLITGPNGCGKSSLFRVLCGLWPLYGGTLYRPPRGRMFYIPQRPYLAIGSLREQVIYPMTTLEMRDRNIRDEDLQKLLDEVHLGELSRRRNGWDNVCDWSDVLSGGEKQRLAMARLFFHRPQYAVLDECTSAVSLDVEGYLYTHARELGITLITVSHRPSLWRFHEKLL 749          
BLAST of Gcaud8439.t1 vs. uniprot
Match: A0A5J4Z191_PORPP (Probable ATP-dependent transporter ycf16 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z191_PORPP)

HSP 1 Score: 240 bits (612), Expect = 3.000e-70
Identity = 121/216 (56.02%), Postives = 159/216 (73.61%), Query Frame = 0
Query:    1 MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVL-TGPNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENVTYPMTWGEARARG-ATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSGGQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISVSHRPSLWEFHDRVL 214
            M PG LV+  +      V+F  V+IVSPD  +LC  L++++ RG++VL TGPNGCGKSS FRVLAG+ P+Y GT+ RP   R+FYVPQRPYLALGTLR+ + YP+ W +A+ +  ATD  + +LLE VHL + ARR+ GLD   DW+EVLSGG+KQRLA  RL FH P  A+L+E +S VS+DVE  LY   K++GI++I+VSHRPSLW FH+ +L
Sbjct:  603 MVPGSLVIGGDH----LVKFVDVHIVSPDRILLCRSLNMEIHRGTNVLITGPNGCGKSSTFRVLAGIWPLYYGTLIRPRSDRLFYVPQRPYLALGTLRDQIIYPLQWEQAQTKHLATDATMWRLLEEVHLLEVARRKGGLDVELDWSEVLSGGEKQRLAMARLFFHRPAFAVLDECTSAVSLDVEGFLYTRAKDLGISLITVSHRPSLWRFHEMLL 814          
The following BLAST results are available for this feature:
BLAST of Gcaud8439.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J399_9FLOR5.200e-10777.67ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
R7QFQ6_CHOCR1.210e-9771.56ATP-binding cassette, sub-family D (ALD), member 3... [more]
A0A7S0BEY8_9RHOD4.550e-9063.43Probable ATP-dependent transporter ycf16 n=1 Tax=R... [more]
A0A7S3A428_9RHOD1.140e-8763.89Probable ATP-dependent transporter ycf16 n=4 Tax=R... [more]
A0A7S0ZH65_9RHOD2.850e-7859.53Probable ATP-dependent transporter ycf16 n=1 Tax=T... [more]
A0A7S1XES6_9RHOD8.670e-7758.33Probable ATP-dependent transporter ycf16 n=2 Tax=C... [more]
A0A7V5I717_9BACT1.890e-7659.53ATP-binding cassette domain-containing protein n=2... [more]
M2XY28_GALSU4.990e-7657.28Probable ATP-dependent transporter ycf16 n=1 Tax=G... [more]
A0A7J7IG11_9RHOD4.280e-7559.07Probable ATP-dependent transporter ycf16 n=1 Tax=C... [more]
A0A5J4Z191_PORPP3.000e-7056.02Probable ATP-dependent transporter ycf16 n=1 Tax=P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003439ABC transporter-like, ATP-binding domainPFAMPF00005ABC_trancoord: 36..175
e-value: 3.8E-17
score: 63.1
IPR003439ABC transporter-like, ATP-binding domainPROSITEPS50893ABC_TRANSPORTER_2coord: 18..245
score: 15.126196
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 5..233
e-value: 3.8E-41
score: 143.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 18..215
NoneNo IPR availablePANTHERPTHR11384ATP-BINDING CASSETTE, SUB-FAMILY D MEMBERcoord: 13..217
NoneNo IPR availablePANTHERPTHR11384:SF13PEROXISOMAL MEMBRANE PROTEIN RELATEDcoord: 13..217
NoneNo IPR availableCDDcd03223ABCD_peroxisomal_ALDPcoord: 18..214
e-value: 1.83854E-72
score: 216.636

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2836_length_4601_cov_3.731264contigNODE_2836_length_4601_cov_3.731264:1801..2712 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1Gcaud8439.t1Gracilaria caudata M_176_S67 malemRNANODE_2836_length_4601_cov_3.731264 1801..2712 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVLTG
PNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENV
TYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSG
GQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISV
SHRPSLWEFHDRVLPVHVVSGSAMAAAMASTVSATMSTPVPSGSIK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like_ATP-bd
IPR027417P-loop_NTPase