Gcaud8439.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8439.t1
Unique NameGcaud8439.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2836_length_4601_cov_3.731264contigNODE_2836_length_4601_cov_3.731264:1801..2712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC011CT
Preferred nameABCD3
PFAMsABC_membrane_2,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue1.68e-77
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota
DescriptionATP-binding cassette sub-family D
COG categoryG
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8439Gcaud8439Gracilaria caudata M_176_S67 malegeneNODE_2836_length_4601_cov_3.731264 1801..2712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1Gcaud8439.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2836_length_4601_cov_3.731264 1801..2712 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1.stop1Gcaud8439.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2836_length_4601_cov_3.731264 1801..1803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1.CDS1Gcaud8439.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2836_length_4601_cov_3.731264 1801..1807 -
Gcaud8439.t1.CDS2Gcaud8439.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2836_length_4601_cov_3.731264 1879..1945 -
Gcaud8439.t1.CDS3Gcaud8439.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2836_length_4601_cov_3.731264 2046..2712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1.exon1Gcaud8439.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2836_length_4601_cov_3.731264 1801..1807 -
Gcaud8439.t1.exon2Gcaud8439.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2836_length_4601_cov_3.731264 1879..1945 -
Gcaud8439.t1.exon3Gcaud8439.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2836_length_4601_cov_3.731264 2046..2712 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1.intron1Gcaud8439.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2836_length_4601_cov_3.731264 1808..1878 -
Gcaud8439.t1.intron2Gcaud8439.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2836_length_4601_cov_3.731264 1946..2045 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8439.t1.start1Gcaud8439.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2836_length_4601_cov_3.731264 2710..2712 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=247bp
MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVLTG
PNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENV
TYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSG
GQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISV
SHRPSLWEFHDRVLPVHVVSGSAMAAAMASTVSATMSTPVPSGSIK*
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spliced messenger RNA

>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_2836_length_4601_cov_3.731264:1801..2712- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGAAAGGGAGAGTAG
TGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCACGGTTTTGT
GCGAAGGGCTTTCGTTAAAGATGGAGCGCGGCAGTCACGTGCTCACTGGG
CCCAATGGGTGCGGAAAGAGCTCGTTATTCCGCGTTCTGGCGGGATTGCG
GCCGGTGTATGGCGGCACGATCTCCCGTCCGGCTCGCTCTCGTATCTTCT
ACGTGCCGCAACGGCCGTATCTAGCGTTAGGGACGTTGCGCGAGAACGTG
ACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGGCGCGACAGATGA
GCTGATCATGCAGTTGTTGGAGAGAGTGCATTTGGGAGACAAAGCACGAC
GACGGGATGGACTGGACGCGGTGAACGACTGGGCGGAGGTTTTGAGCGGC
GGCCAGAAACAGAGGCTGGCGTTTACCAGGCTGCTGTTCCATGCGCCGCA
GCACGCCATTCTTAACGAGGCGTCGTCGAGGGTTTCAATTGACGTGGAGA
AGGCGCTGTACGAGGCGGTGAAGGAGGTGGGCATTACTGTGATCAGCGTG
AGCCACCGGCCGAGTCTTTGGGAGTTCCATGACCGCGTGCTGCCCGTCCA
CGTTGTTAGCGGTTCGGCTATGGCCGCCGCCATGGCCTCCACCGTGTCCG
CCACCATGTCCACCCCCGTACCTTCCGGATCCATCAAGTGA
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protein sequence of Gcaud8439.t1

>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
MRPGKLVVADEDERESSVRFEAVNIVSPDGTVLCEGLSLKMERGSHVLTG
PNGCGKSSLFRVLAGLRPVYGGTISRPARSRIFYVPQRPYLALGTLRENV
TYPMTWGEARARGATDELIMQLLERVHLGDKARRRDGLDAVNDWAEVLSG
GQKQRLAFTRLLFHAPQHAILNEASSRVSIDVEKALYEAVKEVGITVISV
SHRPSLWEFHDRVLPVHVVSGSAMAAAMASTVSATMSTPVPSGSIK*
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mRNA from alignment at NODE_2836_length_4601_cov_3.731264:1801..2712-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_2836_length_4601_cov_3.731264:1801..2712- (Gracilaria caudata M_176_S67 male)
ATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGAAAGGGAGAGTAG
TGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCACGGTTTTGT
GCGAAGGGCTTTCGTTAAAGATGGAGCGCGGCAGTCACGTGCTCACTGGG
CCCAATGGGTGCGGAAAGAGCTCGTTATTCCGCGTTCTGGCGGGATTGCG
GCCGGTGTATGGCGGCACGATCTCCCGTCCGGCTCGCTCTCGTATCTTCT
ACGTGCCGCAACGGCCGTATCTAGCGTTAGGGACGTTGCGCGAGAACGTG
ACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGGCGCGACAGATGA
GCTGATCATGCAGTTGTTGGAGAGAGTGCATTTGGGAGACAAAGCACGAC
GACGGGATGGACTGGACGCGGTGAACGACTGGGCGGAGGTTTTGAGCGGC
GGCCAGAAACAGAGGCTGGCGTTTACCAGGCTGCTGTTCCATGCGCCGCA
GCACGCCATTCTTAACGAGGCGTCGTCGAGGGTTTCAATTGACGTGGAGA
AGGCGCTGTACGAGGCGGTGAAGGAGGTGGGCATTACTGTGATCAGCGTG
AGCCACCGGCCGAGTCTTTGGGAGTTCCATGACCGCGTGCTGCCCGTCCA
CGTTGTTAGCGGTTCGGGTGATATCGGTCATCCCGCCGTGAGGAACGCCT
CTTACTTGGGCCGCCTGCACCGTTGTTCGAGCCATGACCGTTTTGTCCAC
CGTGACCGATGTCGCAGCTATGGCCGCCGCCATGGCCTCCACCGTGTCCG
CCACCATGTCCACCCCCGTACCTTCCGGATCCATGTGAGTTGTCGTATCC
TGTATCGCAGTCAAGTGAACAGATTCATACAACATTGTAAAAAGGATCAC
GCAAGCAAGTGA
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Coding sequence (CDS) from alignment at NODE_2836_length_4601_cov_3.731264:1801..2712-

>Gcaud8439.t1 ID=Gcaud8439.t1|Name=Gcaud8439.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=741bp|location=Sequence derived from alignment at NODE_2836_length_4601_cov_3.731264:1801..2712- (Gracilaria caudata M_176_S67 male)
ATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGAAAGGGAGAGTAG
TGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCACGGTTTTGT
GCGAAGGGCTTTCGTTAAAGATGGAGCGCGGCAGTCACGTGCTCACTGGG
CCCAATGGGTGCGGAAAGAGCTCGTTATTCCGCGTTCTGGCGGGATTGCG
GCCGGTGTATGGCGGCACGATCTCCCGTCCGGCTCGCTCTCGTATCTTCT
ACGTGCCGCAACGGCCGTATCTAGCGTTAGGGACGTTGCGCGAGAACGTG
ACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGGCGCGACAGATGA
GCTGATCATGCAGTTGTTGGAGAGAGTGCATTTGGGAGACAAAGCACGAC
GACGGGATGGACTGGACGCGGTGAACGACTGGGCGGAGGTTTTGAGCGGC
GGCCAGAAACAGAGGCTGGCGTTTACCAGGCTGCTGTTCCATGCGCCGCA
GCACGCCATTCTTAACGAGGCGTCGTCGAGGGTTTCAATTGACGTGGAGA
AGGCGCTGTACGAGGCGGTGAAGGAGGTGGGCATTACTGTGATCAGCGTG
AGCCACCGGCCGAGTCTTTGGGAGTTCCATGACCGCGTGCTGCCCGTCCA
CGTTGTTAGCGGTTCGGCTATGGCCGCCGCCATGGCCTCCACCGTGTCCG
CCACCATGTCCACCCCCGTACCTTCCGGATCCATCAAGTGA
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