Gcaud8438.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8438.t1
Unique NameGcaud8438.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Homology
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BLAST of Gcaud8438.t1 vs. uniprot
Match: A0A2V3J3F1_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F1_9FLOR)

HSP 1 Score: 98.2 bits (243), Expect = 5.820e-21
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0 
Query:    1 MGYNFNFQQSYNPYQQYLQAYMNTNASANDAGGSAGMPANAASPNAPGAGGYDNSH 56
            MGYNFNF QSYNPYQQYLQAYMNT ASAN  GGSA MPANAASPNAPGAGG+DNSH
Sbjct:  391 MGYNFNFPQSYNPYQQYLQAYMNTQASANGTGGSAAMPANAASPNAPGAGGFDNSH 446
The following BLAST results are available for this feature:
BLAST of Gcaud8438.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3F1_9FLOR5.820e-2189.29Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2836_length_4601_cov_3.731264contigNODE_2836_length_4601_cov_3.731264:1331..3701 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8438.t1Gcaud8438.t1Gracilaria caudata M_176_S67 malemRNANODE_2836_length_4601_cov_3.731264 1331..3701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8438.t1 ID=Gcaud8438.t1|Name=Gcaud8438.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MGYNFNFQQSYNPYQQYLQAYMNTNASANDAGGSAGMPANAASPNAPGAG
GYDNSHGSGRLGYVAVQVDQRRTQAANIDREPLIDVANAGAEVGQLTESV
VGQVLFMQVERQTTVHEQLEARDRVAQRIVDKRHGEHHGGNVHNSESDEA
APVTRNDGL*
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